Here is a list of all functions with links to the classes they belong to:

- _ -

• __add__() : jLM.Types.BuilderSpecies
• __call__() : jLM.JupyterDisplay._Report
• __dir__() : jLM.BaseTypes.Namespace
• __enter__() : jLM.ImageAnalysis.SvgContext, jLM.JupyterDisplay._Report
• __exit__() : jLM.ImageAnalysis.SvgContext, jLM.JupyterDisplay._Report
• __float__() : jLM.Types.DiffusionConst, jLM.Types.RateConst
• __getattr__() : jLM.BaseTypes.Namespace
• __getitem__() : jLM.BaseTypes.SimObjs
• __init__() : doxy2swig.Doxy2SWIG, jLM.BaseTypes.Namespace, jLM.BaseTypes.SimObj, jLM.BaseTypes.SimObjs, jLM.CME.CMESimulation, jLM.ColorGen.ColorGen, jLM.ImageAnalysis.SvgContext, jLM.JupyterDisplay._Report, jLM.ParticleSizeSupport.ParticleSizeMixin, jLM.ParticleSizeSupport.ParticleSizeValidator, jLM.RDME.File, jLM.RDME.Sim, jLM.RDME.SpatialModel, jLM.RDMEExtended.FileExtended, jLM.RDMEExtended.SimExtended, jLM.RDMEExtended.SpatialModelExtended, jLM.RegionBuilder.RegionBuilder, jLM.Solvers.ConstBoundaryConc, pyLM.CME.CMESimulation, pyLM.RDME.IntRDMESimulation, pyLM.RDME.RDMERegion, pyLM.RDME.RDMESimulation, pySTDLM.CellArranger.CellArranger, pySTDLM.CellArranger.LooseGridArranger, pySTDLM.CellArranger.RandomArranger, pySTDLM.CellArranger.RandomSphericalArranger, pySTDLM.CellArranger.TightGridArranger, pySTDLM.Cells.BoxCell, pySTDLM.Cells.CapsuleCell, pySTDLM.Cells.CapsuleShellCell, pySTDLM.Cells.CellShape, pySTDLM.Cells.SphereCell, pySTDLM.Distributions.ParticleGenerator
• __iter__() : jLM.BaseTypes.SimObjs
• __len__() : jLM.BaseTypes.SimObjs
• __lt__() : jLM.BaseTypes.SimObj
• __radd__() : jLM.Types.BuilderSpecies
• _buildDiffusionMatrix() : jLM.LmInteract.LmWriteMixin
• _buildReactionLocationMatrix() : jLM.LmInteract.LmWriteMixin
• _buildReactionMatricies() : jLM.LmInteract.LmWriteMixin
• _cachedResult() : jLM.Analysis.TrajAnalysisMixin
• _configure_solver_particle_sizes() : jLM.RDMEExtended.SimExtended
• _copy_lattice_data() : jLM.ParticleSizeSupport.ParticleSizeMixin
• _diffusionModel() : jLM.LmInteract.LmWriteMixin
• _dynamicAttrs() : jLM.BaseTypes.SimObj
• _floatColor() : jLM.Types.Region
• _floatFgColor() : jLM.Types.Region
• _frameParse() : jLM.Analysis.TrajAnalysisMixin
• _get() : jLM.ColorGen.ColorGen
• _hexColor() : jLM.Types.Region
• _hexFgColor() : jLM.Types.Region
• _html() : jLM.Types.Region, jLM.Types.Species
• _initDiffParams() : jLM.LmInteract.LmReadMixin
• _initLattice() : jLM.LmInteract.LmReadMixin
• _initParameters() : jLM.LmInteract.LmReadMixin
• _initRateParams() : jLM.LmInteract.LmReadMixin
• _initRegions() : jLM.LmInteract.LmReadMixin
• _initSpecies() : jLM.LmInteract.LmReadMixin
• _loadFromH5() : jLM.LmInteract.LmReadMixin
• _loadReplicate() : jLM.LmInteract.LmReadMixin
• _modelJ2context() : jLM.JupyterDisplay.FileJupyterMixin, jLM.JupyterDisplay.JupyterDisplayMixin
• _morphApply() : jLM.RegionBuilder.RegionBuilder
• _morphApplyTwice() : jLM.RegionBuilder.RegionBuilder
• _paramTable() : jLM.JupyterDisplay.JupyterDisplayMixin
• _parse() : jLM.Types.Reaction
• _parseArgs() : jLM.RegionBuilder.RegionBuilder
• _placeAllParticles() : jLM.LmInteract.LmWriteMixin
• _postprocess_siteparticlecounts() : jLM.Analysis.TrajAnalysisMixin
• _reactionJ2context() : jLM.JupyterDisplay.JupyterDisplayMixin
• _reactionModel() : jLM.LmInteract.LmWriteMixin
• _readDiffusionTable() : jLM.LmInteract.LmReadMixin
• _readReactions() : jLM.LmInteract.LmReadMixin
• _readReplicates() : jLM.LmInteract.LmReadMixin
• _regionIdParse() : jLM.Analysis.TrajAnalysisMixin
• _regionJ2context() : jLM.JupyterDisplay.JupyterDisplayMixin
• _replicateParse() : jLM.Analysis.TrajAnalysisMixin
• _repr_html_() : jLM.BaseTypes.Namespace, jLM.BaseTypes.SimObj, jLM.CME.CMESimulation, jLM.JupyterDisplay.JupyterDisplayMixin, pyLM.CME.CMESimulation, pyLM.RDME.RDMERegion, pyLM.RDME.RDMESimulation
• _setup() : jLM.BaseTypes.SimObj, jLM.Types.DiffusionConst, jLM.Types.RateConst, jLM.Types.Reaction
• _spatialModel() : jLM.LmInteract.LmWriteMixin
• _speciesIdParse() : jLM.Analysis.TrajAnalysisMixin
• _speciesJ2context() : jLM.JupyterDisplay.FileJupyterMixin, jLM.JupyterDisplay.JupyterDisplayMixin
• _storeParamData() : jLM.LmInteract.LmWriteMixin
• _TeX() : jLM.Types.DiffusionConst, jLM.Types.RateConst, jLM.Types.Reaction, jLM.Types.Region, jLM.Types.Species
• _TeXMath() : jLM.BaseTypes.SimObj
• _toLM() : jLM.Types.RateConst
• _unique_id() : jLM.BaseTypes.SimObj, jLM.Types.DiffusionConst, jLM.Types.RateConst, jLM.Types.Reaction, jLM.Types.Region, jLM.Types.Species
• _upgrade_to_extended_lattice() : jLM.ParticleSizeSupport.ParticleSizeMixin
• _x3dJ2context() : jLM.JupyterDisplay.JupyterDisplayMixin