pySTDLM.Cells.BoxCell Class Reference

Inheritance diagram for pySTDLM.Cells.BoxCell:

Collaboration diagram for pySTDLM.Cells.BoxCell:

Public Member Functions
	__init__ (self, p1=3 *[0.], p2=3 *[0.])
	internalModelCell (self, attr)
	computeVolume (self)
	internalAddToSim (self, sim)
	internalTranslateCell (self, point)
Public Member Functions inherited from pySTDLM.Cells.CellShape
	__init__ (self)
	getVolume (self)
	boundingBox (self)
	addToSimulation (self, sim)
	translateCell (self, point)
	createModelCell (self, attr)
	setRegions (self, membrane, cytoplasm)

Public Attributes
int	p1 = p1
list	p2 = p2
	width = p2[0]-p1[0]
	height = p2[1]-p1[1]
	depth = p2[2]-p1[2]
Public Attributes inherited from pySTDLM.Cells.CellShape
str	name = "Unknown"
float	volume = -1.0
int	mins = 3*[0.]
int	maxs = 3*[0.]
float	membraneThickness = 0.0
str	memtype = "membrane"
str	cyttype = "cytoplasm"

Detailed Description

A representation for a spherical cell. This cell requires an attribute dictionary that includes "width", "height", "depth" and "membraneThickness"

Constructor & Destructor Documentation

__init__()

pySTDLM.Cells.BoxCell.__init__	(		self,
			p1 = 3*[0.],
			p2 = 3*[0.] )

Member Function Documentation

computeVolume()

pySTDLM.Cells.BoxCell.computeVolume

(

self

)

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internalAddToSim()

pySTDLM.Cells.BoxCell.internalAddToSim	(		self,
			sim )

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internalModelCell()

pySTDLM.Cells.BoxCell.internalModelCell	(		self,
			attr )

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internalTranslateCell()

pySTDLM.Cells.BoxCell.internalTranslateCell	(		self,
			point )

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Member Data Documentation

depth

pySTDLM.Cells.BoxCell.depth = p2[2]-p1[2]

height

pySTDLM.Cells.BoxCell.height = p2[1]-p1[1]

p1

pySTDLM.Cells.BoxCell.p1 = p1

p2

pySTDLM.Cells.BoxCell.p2 = p2

width

pySTDLM.Cells.BoxCell.width = p2[0]-p1[0]

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The documentation for this class was generated from the following file:

• /data2/LM_zls_github/Lattice-Microbes/src/pylm/pySTDLM/Cells.py