Lattice Microbes 2.5
This is for whole cell modeling
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pySTDLM.Cells.CapsuleShellCell Class Reference
Inheritance diagram for pySTDLM.Cells.CapsuleShellCell:
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Public Member Functions

 __init__ (self, p1=3 *[0.], p2=3 *[0.], radius=0., length=0.)
 internalModelCell (self, attr)
 computeVolume (self)
 internalAddToSim (self, sim)
Public Member Functions inherited from pySTDLM.Cells.CapsuleCell
 __init__ (self, p1=3 *[0.], p2=3 *[0.], radius=0., length=0.)
 internalTranslateCell (self, point)
Public Member Functions inherited from pySTDLM.Cells.CellShape
 __init__ (self)
 getVolume (self)
 boundingBox (self)
 addToSimulation (self, sim)
 translateCell (self, point)
 createModelCell (self, attr)
 setRegions (self, membrane, cytoplasm)

Additional Inherited Members

Public Attributes inherited from pySTDLM.Cells.CapsuleCell
int p1 = p1
list p2 = p2
 radius = radius
 length = length
Public Attributes inherited from pySTDLM.Cells.CellShape
str name = "Unknown"
float volume = -1.0
int mins = 3*[0.]
int maxs = 3*[0.]
float membraneThickness = 0.0
str memtype = "membrane"
str cyttype = "cytoplasm"

Detailed Description

A representation for a spherical cell. This cell requires an attribute dictionary that includes "radius", "length" and "membraneThickness"

Constructor & Destructor Documentation

◆ __init__()

pySTDLM.Cells.CapsuleShellCell.__init__ ( self,
p1 = 3*[0.],
p2 = 3*[0.],
radius = 0.,
length = 0. )

Member Function Documentation

◆ computeVolume()

pySTDLM.Cells.CapsuleShellCell.computeVolume ( self)

Reimplemented from pySTDLM.Cells.CapsuleCell.

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◆ internalAddToSim()

pySTDLM.Cells.CapsuleShellCell.internalAddToSim ( self,
sim )

Reimplemented from pySTDLM.Cells.CapsuleCell.

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◆ internalModelCell()

pySTDLM.Cells.CapsuleShellCell.internalModelCell ( self,
attr )

Reimplemented from pySTDLM.Cells.CapsuleCell.

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The documentation for this class was generated from the following file:
  • /data2/LM_zls_github/Lattice-Microbes/src/pylm/pySTDLM/Cells.py