Here is a list of all class members with links to the classes they belong to:
- _ -
- __add__() : jLM.Types.BuilderSpecies
- __call__() : jLM.JupyterDisplay._Report
- __dir__() : jLM.BaseTypes.Namespace
- __enter__() : jLM.ImageAnalysis.SvgContext, jLM.JupyterDisplay._Report
- __exit__() : jLM.ImageAnalysis.SvgContext, jLM.JupyterDisplay._Report
- __float__() : jLM.Types.DiffusionConst, jLM.Types.RateConst
- __getattr__() : jLM.BaseTypes.Namespace
- __getitem__() : jLM.BaseTypes.SimObjs
- __init__() : doxy2swig.Doxy2SWIG, jLM.BaseTypes.Namespace, jLM.BaseTypes.SimObj, jLM.BaseTypes.SimObjs, jLM.CME.CMESimulation, jLM.ColorGen.ColorGen, jLM.ImageAnalysis.SvgContext, jLM.JupyterDisplay._Report, jLM.ParticleSizeSupport.ParticleSizeMixin, jLM.ParticleSizeSupport.ParticleSizeValidator, jLM.RDME.File, jLM.RDME.Sim, jLM.RDME.SpatialModel, jLM.RDMEExtended.FileExtended, jLM.RDMEExtended.SimExtended, jLM.RDMEExtended.SpatialModelExtended, jLM.RegionBuilder.RegionBuilder, jLM.Solvers.ConstBoundaryConc, pyLM.CME.CMESimulation, pyLM.RDME.IntRDMESimulation, pyLM.RDME.RDMERegion, pyLM.RDME.RDMESimulation, pySTDLM.CellArranger.CellArranger, pySTDLM.CellArranger.LooseGridArranger, pySTDLM.CellArranger.RandomArranger, pySTDLM.CellArranger.RandomSphericalArranger, pySTDLM.CellArranger.TightGridArranger, pySTDLM.Cells.BoxCell, pySTDLM.Cells.CapsuleCell, pySTDLM.Cells.CapsuleShellCell, pySTDLM.Cells.CellShape, pySTDLM.Cells.SphereCell, pySTDLM.Distributions.ParticleGenerator
- __iter__() : jLM.BaseTypes.SimObjs
- __len__() : jLM.BaseTypes.SimObjs
- __lt__() : jLM.BaseTypes.SimObj
- __radd__() : jLM.Types.BuilderSpecies
- _bgFloat : jLM.ColorGen.ColorGen
- _bgHex : jLM.ColorGen.ColorGen
- _buildDiffusionMatrix() : jLM.LmInteract.LmWriteMixin
- _buildReactionLocationMatrix() : jLM.LmInteract.LmWriteMixin
- _buildReactionMatricies() : jLM.LmInteract.LmWriteMixin
- _cachedResult() : jLM.Analysis.TrajAnalysisMixin
- _cls : jLM.BaseTypes.SimObjs
- _concPower : jLM.Types.RateConst
- _configure_solver_particle_sizes() : jLM.RDMEExtended.SimExtended
- _copy_lattice_data() : jLM.ParticleSizeSupport.ParticleSizeMixin
- _cuda_dret_ : lm::CUDA
- _diffParamMatrix : jLM.LmInteract.LmWriteMixin
- _diffusionModel() : jLM.LmInteract.LmWriteMixin
- _dynamicAttrs() : jLM.BaseTypes.SimObj
- _fgFloat : jLM.ColorGen.ColorGen
- _fgHex : jLM.ColorGen.ColorGen
- _floatColor() : jLM.Types.Region
- _floatFgColor() : jLM.Types.Region
- _frameParse() : jLM.Analysis.TrajAnalysisMixin
- _frozen : jLM.BaseTypes.SimObjs
- _genHSV : jLM.ColorGen.ColorGen
- _get() : jLM.ColorGen.ColorGen
- _hexColor() : jLM.Types.Region
- _hexFgColor() : jLM.Types.Region
- _html() : jLM.Types.Region, jLM.Types.Species
- _hue : jLM.ColorGen.ColorGen
- _id2name : jLM.BaseTypes.SimObjs
- _id2obj : jLM.BaseTypes.SimObjs
- _idbase : jLM.BaseTypes.SimObjs
- _inctx : jLM.JupyterDisplay._Report
- _initDiffParams() : jLM.LmInteract.LmReadMixin
- _initLattice() : jLM.LmInteract.LmReadMixin
- _initParameters() : jLM.LmInteract.LmReadMixin
- _initRateParams() : jLM.LmInteract.LmReadMixin
- _initRegions() : jLM.LmInteract.LmReadMixin
- _initSpecies() : jLM.LmInteract.LmReadMixin
- _keys0 : jLM.JupyterDisplay.JupyterDisplayMixin
- _loadFromH5() : jLM.LmInteract.LmReadMixin
- _loadReplicate() : jLM.LmInteract.LmReadMixin
- _modelJ2context() : jLM.JupyterDisplay.FileJupyterMixin, jLM.JupyterDisplay.JupyterDisplayMixin
- _morphApply() : jLM.RegionBuilder.RegionBuilder
- _morphApplyTwice() : jLM.RegionBuilder.RegionBuilder
- _net : jLM.RegionBuilder.RegionBuilder
- _obj : jLM.BaseTypes.SimObjs
- _paramTable() : jLM.JupyterDisplay.JupyterDisplayMixin
- _parse() : jLM.Types.Reaction
- _parseArgs() : jLM.RegionBuilder.RegionBuilder
- _particle_sizes : jLM.ParticleSizeSupport.ParticleSizeMixin
- _particleDistConc : jLM.LmInteract.LmWriteMixin, jLM.RDME.SpatialModel
- _particleDistCount : jLM.LmInteract.LmWriteMixin, jLM.RDME.SpatialModel
- _particlePlacement : jLM.LmInteract.LmWriteMixin, jLM.RDME.SpatialModel
- _particlesPlaced : jLM.LmInteract.LmWriteMixin, jLM.RDME.Sim
- _pCount : jLM.Analysis.LatticeAnalysisMixin
- _perfPrintInterval : jLM.RDME.SpatialModel
- _placeAllParticles() : jLM.LmInteract.LmWriteMixin
- _postprocCache : jLM.Analysis.TrajAnalysisMixin
- _postprocess_siteparticlecounts() : jLM.Analysis.TrajAnalysisMixin
- _reactionJ2context() : jLM.JupyterDisplay.JupyterDisplayMixin
- _reactionLocations : jLM.LmInteract.LmWriteMixin, jLM.RDME.SpatialModel
- _reactionModel() : jLM.LmInteract.LmWriteMixin
- _readDiffusionTable() : jLM.LmInteract.LmReadMixin
- _readReactions() : jLM.LmInteract.LmReadMixin
- _readReplicates() : jLM.LmInteract.LmReadMixin
- _regionIdParse() : jLM.Analysis.TrajAnalysisMixin
- _regionJ2context() : jLM.JupyterDisplay.JupyterDisplayMixin
- _replicateParse() : jLM.Analysis.TrajAnalysisMixin
- _repr_html_() : jLM.BaseTypes.Namespace, jLM.BaseTypes.SimObj, jLM.CME.CMESimulation, jLM.JupyterDisplay.JupyterDisplayMixin, pyLM.CME.CMESimulation, pyLM.RDME.RDMERegion, pyLM.RDME.RDMESimulation
- _rows : jLM.JupyterDisplay._Report
- _rxnParamMatrix : jLM.LmInteract.LmWriteMixin
- _sCount : jLM.Analysis.LatticeAnalysisMixin
- _setup() : jLM.BaseTypes.SimObj, jLM.Types.DiffusionConst, jLM.Types.RateConst, jLM.Types.Reaction
- _sim : jLM.BaseTypes.SimObj, jLM.BaseTypes.SimObjs
- _simobj : jLM.BaseTypes.Namespace
- _size_validator : jLM.ParticleSizeSupport.ParticleSizeMixin
- _spatialModel() : jLM.LmInteract.LmWriteMixin
- _spCts : jLM.LmInteract.LmWriteMixin
- _speciesIdParse() : jLM.Analysis.TrajAnalysisMixin
- _speciesJ2context() : jLM.JupyterDisplay.FileJupyterMixin, jLM.JupyterDisplay.JupyterDisplayMixin
- _staticAttrs : jLM.BaseTypes.SimObj
- _storeParamData() : jLM.LmInteract.LmWriteMixin
- _TeX() : jLM.Types.DiffusionConst, jLM.Types.RateConst, jLM.Types.Reaction, jLM.Types.Region, jLM.Types.Species
- _TeXMath() : jLM.BaseTypes.SimObj
- _texstr : jLM.BaseTypes.SimObj
- _toLM() : jLM.Types.RateConst
- _transitionRates : jLM.JupyterDisplay.JupyterDisplayMixin, jLM.LmInteract.LmWriteMixin, jLM.RDME.SpatialModel
- _unique_id() : jLM.BaseTypes.SimObj, jLM.Types.DiffusionConst, jLM.Types.RateConst, jLM.Types.Reaction, jLM.Types.Region, jLM.Types.Species
- _unit : jLM.Types.DiffusionConst, jLM.Types.RateConst
- _upgrade_to_extended_lattice() : jLM.ParticleSizeSupport.ParticleSizeMixin
- _x3dJ2context() : jLM.JupyterDisplay.JupyterDisplayMixin