Here is a list of all class members with links to the classes they belong to:

- g -

• generate() : doxy2swig.Doxy2SWIG
• generateRandomValues() : lm::rng::XORWow
• generateSizeAwareTrajectory() : lm::MpdRdmeSolverExtended
• generateTrajectory() : CMESolver, lm::cme::CMESolver, lm::cme::GillespieDSolver, lm::cme::HillSwitch, lm::cme::NextReactionSolver, lm::cme::SelfRegulatingGeneSwitch, lm::cme::TwoStateExpression, lm::cme::TwoStateHillLoopSwitch, lm::cme::TwoStateHillSwitch, lm::me::MESolver, lm::MpdRdmeSolverExtended, lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MpdTestHarness, lm::rdme::MPIMpdRdmeSolver, lm::rdme::NextSubvolumeSolver, MESolver, MpdRdmeSolver
• generator : pySTDLM.Distributions.ParticleGenerator
• get() : jLM.BaseTypes.SimObjs
• get_affinity() : MultiGPUMapper
• get_all_particle_sizes() : jLM.ParticleSizeSupport.ParticleSizeMixin
• get_apron() : MultiGPUMapper
• get_authority_offset() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_authority_size() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_capacity_info() : jLM.ParticleSizeSupport.ParticleSizeValidator
• get_capacity_summary() : jLM.ParticleSizeSupport.ParticleSizeMixin
• get_function_signature() : doxy2swig.Doxy2SWIG
• get_global_dim() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_global_input_offset() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_global_offset() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_global_output_offset() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_global_size() : MultiGPUMapper
• get_lattice_dim() : MultiGPUMapper
• get_local_dim() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_local_size() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• get_memberdef_nodes_and_signatures() : doxy2swig.Doxy2SWIG
• get_num_gpus() : MultiGPUMapper
• get_overlap() : MultiGPUMapper
• get_particle_size() : jLM.ParticleSizeSupport.ParticleSizeMixin, jLM.ParticleSizeSupport.ParticleSizeValidator
• get_site_analysis() : jLM.RDMEExtended.SimExtended
• get_specific_nodes() : doxy2swig.Doxy2SWIG
• get_specific_subnodes() : doxy2swig.Doxy2SWIG
• getAutoNamespace() : jLM.BaseTypes.SimObjs
• getAvailableCpuCores() : lm::main::ResourceAllocator, ResourceAllocator
• getBoundingBox() : lm::builder::Shape
• getCapabilitiesString() : lm::CUDA
• getCenter() : lm::builder::Cone, lm::builder::Ellipse, lm::builder::Hemisphere, lm::builder::Mesh, lm::builder::Sphere, lm::builder::Torus
• getComputeCapabilities() : lm::CUDA
• getConfiguredParticleCount() : lm::rdme::ParticleSizeManager
• getCurrentDevice() : lm::CUDA
• getDateTimeString() : lm::Print, Print
• getDiffusionModel() : lm::io::hdf5::SimulationFile, SimulationFile
• getDiffusionModelLattice() : lm::io::hdf5::SimulationFile, SimulationFile
• getExpRandomDouble() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getExpRandomDoubles() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getFreeMemory() : lm::CUDA
• getGPUMemoryDest() : CudaByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaIntLattice
• getGPUMemoryParticleSizes() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getGPUMemorySiteSizes() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getGPUMemorySiteTypes() : CudaByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaIntLattice
• getGPUMemorySizeDest() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getGPUMemorySizeLattice() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getGPUMemorySrc() : CudaByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaIntLattice
• getHeight() : lm::builder::Cone
• getId() : lm::thread::Thread
• getinfo() : ZDivMultiGPUMapper
• getInnerRadius() : lm::builder::CapsuleShell
• getInstance() : lm::main::DataOutputQueue, lm::thread::WorkerManager, WorkerManager
• getLattice() : lm::io::hdf5::SimulationFile, pyLM.RDME.RDMESimulation, SimulationFile
• getLatticeHistogram() : jLM.Analysis.TrajAnalysisMixin, jLM.Types.TrajSpecies
• getLatticeMemorySize() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getLatticeSite() : pyLM.RDME.RDMESimulation
• getLatticeTimes() : lm::io::hdf5::SimulationFile, SimulationFile
• getLatticeTrajectory() : jLM.Analysis.TrajAnalysisMixin, jLM.Types.TrajSpecies
• getMaxOccupancy() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getMaxParticle() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getMaxParticleCount() : lm::rdme::ByteLatticeExtended, lm::rdme::ParticleSizeManager
• getMaxSimultaneousReplicates() : lm::main::ResourceAllocator, ResourceAllocator
• getMaxSiteType() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getNearbySites() : Lattice, lm::rdme::Lattice
• getNeighboringSites() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getNextReaction() : lm::reaction::ReactionQueue, ReactionQueue
• getNormRandomDouble() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getNormRandomDoubles() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getNumberDevices() : lm::CUDA
• getNumberSites() : Lattice, lm::rdme::Lattice
• getNumberTrajectory() : jLM.Analysis.TrajAnalysisMixin, jLM.Types.TrajSpecies
• getNumberTrajectoryFromRegion() : jLM.Analysis.TrajAnalysisMixin, jLM.Types.TrajRegion, jLM.Types.TrajSpecies
• getOccupancy() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getOccupancyStatistics() : lm::rdme::IntMpdRdmeSolverExtended
• getOrientation() : lm::builder::Hemisphere
• getOuterRadius() : lm::builder::CapsuleShell
• getP1() : lm::builder::Capsule, lm::builder::CapsuleShell, lm::builder::Cuboid, lm::builder::Cylinder
• getP2() : lm::builder::Capsule, lm::builder::CapsuleShell, lm::builder::Cuboid, lm::builder::Cylinder
• getParameter() : lm::io::hdf5::SimulationFile, SimulationFile
• getParameters() : lm::io::hdf5::SimulationFile, SimulationFile
• getParticle() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getParticleCounts() : Lattice, lm::io::hdf5::SimulationFile, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice, SimulationFile
• getParticleLatticeView() : CudaByteLattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::IntLattice
• getParticleMemorySize() : CudaByteLattice, lm::rdme::CudaByteLattice
• getParticlesAtSite() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getParticleSize() : CudaByteLatticeExtended, lm::MpdRdmeSolverExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended, lm::rdme::IntMpdRdmeSolverExtended, lm::rdme::ParticleSizeManager
• getParticleSizeManager() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getParticleSizes() : lm::rdme::ParticleSizeManager
• getParticleSizesDict() : lm::rdme::ParticleSizeManager
• getParticlesMemory() : lm::rdme::ByteLattice, lm::rdme::IntLattice
• getRadius() : lm::builder::Capsule, lm::builder::Cone, lm::builder::Cylinder, lm::builder::Hemisphere, lm::builder::Mesh, lm::builder::Sphere
• getRadius1() : lm::builder::Ellipse, lm::builder::Torus
• getRadius2() : lm::builder::Ellipse, lm::builder::Torus
• getRadius3() : lm::builder::Ellipse
• getRandom() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getRandomDouble() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getRandomDoubles() : lm::rng::RandomGenerator, lm::rng::XORShift, lm::rng::XORWow, RandomGenerator
• getrbuf() : ZDivMultiGPUMapper
• getReactionCount() : pyLM.RDME.RDMERegion
• getReactionEvent() : lm::reaction::ReactionQueue, ReactionQueue
• getReactionModel() : lm::io::hdf5::SimulationFile, SimulationFile
• getReactionRateConstantsView() : CMESolver, lm::cme::CMESolver
• getReplicate() : lm::main::ReplicateRunner, ReplicateRunner
• getReplicateExitCode() : lm::main::ReplicateRunner, ReplicateRunner
• getSeed() : lm::rng::RandomGenerator, RandomGenerator
• getSegmentDescriptor() : MultiGPUMapper
• getShapeType() : lm::builder::Shape
• getSiteLatticeView() : CudaByteLattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::IntLattice
• getSitesMemory() : lm::rdme::ByteLattice, lm::rdme::IntLattice
• getSiteType() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• getSiteTypeNames() : lm::io::hdf5::SimulationFile, SimulationFile
• getSiteTypes() : lm::rdme::IntLattice
• getSize() : Lattice, lm::rdme::Lattice
• getSizeBasedOccupancy() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getSizeBasedOccupancyStats() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• getSpacing() : Lattice, lm::rdme::Lattice
• getSpatialModel() : lm::builder::LatticeBuilder, lm::io::hdf5::SimulationFile, SimulationFile
• getSpeciesCounts() : lm::io::hdf5::SimulationFile, SimulationFile
• getSpeciesCountTimes() : lm::io::hdf5::SimulationFile, SimulationFile
• getSpeciesCountView() : CMESolver, lm::cme::CMESolver
• getSpeciesNames() : lm::io::hdf5::SimulationFile, SimulationFile
• gettbuf() : ZDivMultiGPUMapper
• getTimestepSeed() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, MpdRdmeSolver
• getType() : lm::builder::Shape
• getVolume() : lm::builder::Capsule, lm::builder::CapsuleShell, lm::builder::Cone, lm::builder::Cuboid, lm::builder::Cylinder, lm::builder::Difference, lm::builder::Ellipse, lm::builder::Hemisphere, lm::builder::Intersection, lm::builder::Mesh, lm::builder::Shape, lm::builder::Sphere, lm::builder::Torus, lm::builder::Union, lm::builder::UnionSet, pySTDLM.Cells.CellShape
• getXSize() : Lattice, lm::rdme::Lattice
• getYSize() : Lattice, lm::rdme::Lattice
• getZSize() : Lattice, lm::rdme::Lattice
• GillespieDSolver() : lm::cme::GillespieDSolver
• global_dim : gpu_info
• global_offset : segmentDescriptor
• global_pos : gpu_info
• gpu : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver
• gpu_worker_thread : lm::rdme::MGPUMpdRdmeSolver
• gpu_worker_thread_int : lm::rdme::MGPUIntMpdRdmeSolver
• gpuid : segmentDescriptor
• grid_r : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver
• grid_x : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver
• grid_y : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver
• grid_z : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver
• group : lm::io::hdf5::SimulationFile::ReplicateHandles, SimulationFile::ReplicateHandles