Here is a list of all functions with links to the classes they belong to:

- c -

• calculateReactionLaunchParameters() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, MpdRdmeSolver
• calculateSiteOccupancy() : lm::rdme::ParticleSizeManager
• calculateSubvolumePropensity() : lm::rdme::NextSubvolumeSolver
• calculateXLaunchParameters() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, MpdRdmeSolver
• calculateYLaunchParameters() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, MpdRdmeSolver
• calculateZLaunchParameters() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, MpdRdmeSolver
• canAddParticle() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended, lm::rdme::ParticleSizeManager
• canAddParticleGPU() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• canAddParticles() : lm::rdme::ParticleSizeManager
• Capsule() : lm::builder::Capsule
• capsule() : jLM.RegionBuilder.RegionBuilder
• CapsuleShell() : lm::builder::CapsuleShell
• cellFactory() : pySTDLM.CellArranger.CellArranger
• checkpoint() : lm::io::hdf5::SimulationFile, lm::main::LocalDataOutputWorker, lm::thread::Worker, SimulationFile, Worker
• CheckpointSignaler() : lm::main::CheckpointSignaler
• checkpointWorkers() : lm::thread::WorkerManager, WorkerManager
• checkSpeciesCountsAgainstLattice() : lm::rdme::NextSubvolumeSolver
• clear() : lm::rdme::ParticleSizeManager
• close() : lm::io::hdf5::SimulationFile, SimulationFile
• close_hdf_file() : jLM.RDME.File
• closeAllReplicates() : lm::io::hdf5::SimulationFile, SimulationFile
• closeReplicate() : lm::io::hdf5::SimulationFile, SimulationFile
• closeReplicateHandles() : lm::io::hdf5::SimulationFile, SimulationFile
• closing() : jLM.RegionBuilder.RegionBuilder
• CMESolver() : CMESolver, lm::cme::CMESolver
• CommandLineArgumentException() : lm::CommandLineArgumentException
• communicate_edges() : ZDivMPIGPUMapper
• competitiveMMPropensity() : CMESolver, lm::cme::CMESolver
• CompetitiveMMPropensityArgs() : CMESolver::CompetitiveMMPropensityArgs, lm::cme::CMESolver::CompetitiveMMPropensityArgs
• compose() : jLM.RegionBuilder.RegionBuilder
• compute_balances() : MultiGPUMapper
• computePropensities() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, MpdRdmeSolver
• computeVolume() : pySTDLM.Cells.BoxCell, pySTDLM.Cells.CapsuleCell, pySTDLM.Cells.CapsuleShellCell, pySTDLM.Cells.SphereCell
• Cone() : lm::builder::Cone
• construct() : jLM.JupyterDisplay.JupyterDisplayMixin, jLM.RDMEExtended.SimExtended
• contains() : lm::builder::Capsule, lm::builder::CapsuleShell, lm::builder::Cone, lm::builder::Cuboid, lm::builder::Cylinder, lm::builder::Difference, lm::builder::Ellipse, lm::builder::Hemisphere, lm::builder::Intersection, lm::builder::Mesh, lm::builder::Shape, lm::builder::Sphere, lm::builder::Torus, lm::builder::Union, lm::builder::UnionSet
• convexHull() : jLM.RegionBuilder.RegionBuilder
• copy_edge_to_device() : ZDivMPIGPUMapper
• copy_edge_to_host() : ZDivMPIGPUMapper
• copyFromGPU() : CudaByteLattice, CudaByteLatticeExtended, lm::rdme::CudaByteLattice, lm::rdme::CudaByteLatticeExtended, lm::rdme::CudaIntLattice
• copyModelsToDevice() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, MpdRdmeSolver
• copyNativeToRowMajor() : lm::rdme::IntLattice
• copyNativeToRowMajorByte() : lm::rdme::ByteLattice
• copyParticleLattice() : jLM.LmInteract.LmWriteMixin
• copyParticleSizesToDevice() : lm::MpdRdmeSolverExtended
• copyReactionDataToDevice() : lm::MpdRdmeSolverExtended
• copyRowMajorByteToNative() : lm::rdme::ByteLattice
• copyRowMajorToNative() : lm::rdme::IntLattice
• copySites() : lm::rdme::ByteLattice
• copySitesNativeToRowMajorByte() : lm::rdme::ByteLattice
• copySitesRowMajorByteToNative() : lm::rdme::ByteLattice, lm::rdme::IntLattice
• copyToGPU() : CudaByteLattice, CudaByteLatticeExtended, lm::rdme::CudaByteLattice, lm::rdme::CudaByteLatticeExtended, lm::rdme::CudaIntLattice
• create() : lm::io::hdf5::SimulationFile, SimulationFile
• createModelCell() : pySTDLM.Cells.CellShape
• createReplicateHandles() : lm::io::hdf5::SimulationFile, SimulationFile
• cross() : lm::builder::vector
• Cuboid() : lm::builder::Cuboid
• CudaByteLattice() : CudaByteLattice, lm::rdme::CudaByteLattice
• CudaByteLatticeExtended() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• CUDADriverException() : lm::CUDADriverException
• CUDAException() : lm::CUDAException
• CudaIntLattice() : lm::rdme::CudaIntLattice
• Cylinder() : lm::builder::Cylinder
• cylinder() : jLM.RegionBuilder.RegionBuilder