MainMPI.cpp File Reference

#include <iostream>
#include <string>
#include <map>
#include <cstdio>
#include <cstring>
#include <ctime>
#include "config.h"
#include <csignal>
#include <cerrno>
#include <unistd.h>
#include <sys/wait.h>
#include <pthread.h>
#include <google/protobuf/stubs/common.h>
#include "core/Print.h"
#include "core/Exceptions.h"
#include "core/Types.h"
#include "core/Math.h"
#include "mpi/lm_mpi.h"
#include "io/lm_hdf5.h"
#include "io/SimulationFile.h"
#include "DiffusionModel.pb.h"
#include "ReactionModel.pb.h"
#include "io/SimulationParameters.h"
#include "core/CheckpointSignaler.h"
#include "core/DataOutputQueue.h"
#include "core/LocalDataOutputWorker.h"
#include "core/MPIRemoteDataOutputQueue.h"
#include "cmd/common.h"
#include "core/Globals.h"
#include "core/SignalHandler.h"
#include "core/ReplicateRunner.h"
#include "core/ResourceAllocator.h"
#include "SimulationParameters.pb.h"
#include "thread/Thread.h"
#include "thread/WorkerManager.h"
#include "lptf/Profile.h"

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Functions
void	listDevicesMPI ()
void	executeSimulationMPI ()
void	executeSimulationMPISingleMaster ()
void	executeSimulationMPISingleSlave ()
void	broadcastSimulationParameters (void *staticDataBuffer, map< string, string > &simulationParameters)
void	broadcastReactionModel (void *staticDataBuffer, lm::io::ReactionModel *reactionModel)
void	broadcastDiffusionModel (void *staticDataBuffer, lm::io::DiffusionModel *diffusionModel, uint8_t *lattice, size_t latticeSize, uint8_t *latticeSites, size_t latticeSitesSize)
map< string, string >	receiveSimulationParameters (void *staticDataBuffer)
void	receiveReactionModel (void *staticDataBuffer, lm::io::ReactionModel *reactionModel)
void	receiveDiffusionModel (void *staticDataBuffer, lm::io::DiffusionModel *diffusionModel, uint8_t **lattice, size_t *latticeSize, uint8_t **latticeSites, size_t *latticeSitesSize)
ReplicateRunner *	startReplicate (int replicate, MESolverFactory solverFactory, std::map< std::string, string > &simulationParameters, lm::io::ReactionModel *reactionModel, lm::io::DiffusionModel *diffusionModel, uint8_t *lattice, size_t latticeSize, uint8_t *latticeSites, size_t latticeSitesSize, ResourceAllocator &resourceAllocator)
ReplicateRunner *	popNextFinishedReplicate (list< ReplicateRunner * > &runningReplicates, ResourceAllocator &resourceAllocator)
int	main (int argc, char **argv)

Variables
	PROF_ALLOC

Function Documentation

broadcastDiffusionModel()

void broadcastDiffusionModel	(	void *	staticDataBuffer,
		lm::io::DiffusionModel *	diffusionModel,
		uint8_t *	lattice,
		size_t	latticeSize,
		uint8_t *	latticeSites,
		size_t	latticeSitesSize )

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broadcastReactionModel()

void broadcastReactionModel	(	void *	staticDataBuffer,
		lm::io::ReactionModel *	reactionModel )

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broadcastSimulationParameters()

void broadcastSimulationParameters	(	void *	staticDataBuffer,
		map< string, string > &	simulationParameters )

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executeSimulationMPI()

void executeSimulationMPI

(

)

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executeSimulationMPISingleMaster()

void executeSimulationMPISingleMaster

(

)

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executeSimulationMPISingleSlave()

void executeSimulationMPISingleSlave

(

)

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listDevicesMPI()

void listDevicesMPI

(

)

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main()

int main	(	int	argc,
		char **	argv )

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popNextFinishedReplicate()

ReplicateRunner * popNextFinishedReplicate	(	list< ReplicateRunner * > &	runningReplicates,
		ResourceAllocator &	resourceAllocator )

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receiveDiffusionModel()

void receiveDiffusionModel	(	void *	staticDataBuffer,
		lm::io::DiffusionModel *	diffusionModel,
		uint8_t **	lattice,
		size_t *	latticeSize,
		uint8_t **	latticeSites,
		size_t *	latticeSitesSize )

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receiveReactionModel()

void receiveReactionModel	(	void *	staticDataBuffer,
		lm::io::ReactionModel *	reactionModel )

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receiveSimulationParameters()

map< string, string > receiveSimulationParameters

(

void *

staticDataBuffer

)

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startReplicate()

ReplicateRunner * startReplicate	(	int	replicate,
		MESolverFactory	solverFactory,
		std::map< std::string, string > &	simulationParameters,
		lm::io::ReactionModel *	reactionModel,
		lm::io::DiffusionModel *	diffusionModel,
		uint8_t *	lattice,
		size_t	latticeSize,
		uint8_t *	latticeSites,
		size_t	latticeSitesSize,
		ResourceAllocator &	resourceAllocator )

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Variable Documentation

PROF_ALLOC

PROF_ALLOC