Lattice Microbes 2.5
This is for whole cell modeling
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lm_hdf5.h
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1/*
2 * University of Illinois Open Source License
3 * Copyright 2010-2018 Luthey-Schulten Group,
4 * All rights reserved.
5 *
6 * Developed by: Luthey-Schulten Group
7 * University of Illinois at Urbana-Champaign
8 * http://www.scs.uiuc.edu/~schulten
9 *
10 * Permission is hereby granted, free of charge, to any person obtaining a copy of
11 * this software and associated documentation files (the Software), to deal with
12 * the Software without restriction, including without limitation the rights to
13 * use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
14 * of the Software, and to permit persons to whom the Software is furnished to
15 * do so, subject to the following conditions:
16 *
17 * - Redistributions of source code must retain the above copyright notice,
18 * this list of conditions and the following disclaimers.
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20 * - Redistributions in binary form must reproduce the above copyright notice,
21 * this list of conditions and the following disclaimers in the documentation
22 * and/or other materials provided with the distribution.
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24 * - Neither the names of the Luthey-Schulten Group, University of Illinois at
25 * Urbana-Champaign, nor the names of its contributors may be used to endorse or
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27 * permission.
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29 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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31 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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36 *
37 * Author(s): Elijah Roberts
38 */
39
40#ifndef LM_IO_HDF5_HDF5_H_
41#define LM_IO_HDF5_HDF5_H_
42
43#include <hdf5.h>
44#include <hdf5_hl.h>
45#include "core/Exceptions.h"
46
47namespace lm {
48namespace io {
49namespace hdf5 {
50
54{
55public:
60 HDF5Exception(herr_t errorCode, const char * file, const int line) : Exception("HDF5 error",(int)errorCode,file,line) {}
61 void printStackTrace() {H5Eprint2(H5E_DEFAULT,NULL);}
62};
63
64}
65}
66}
67
70#define HDF5_EXCEPTION_CHECK(hdf5_call) {herr_t _hdf5_ret_=hdf5_call; if (_hdf5_ret_ < 0) throw lm::io::hdf5::HDF5Exception(_hdf5_ret_,__FILE__,__LINE__);}
73#define HDF5_EXCEPTION_CALL(val,hdf5_call) val=hdf5_call; if (val < 0) {herr_t _hdf5_err_=(herr_t)val; val=0; throw lm::io::hdf5::HDF5Exception(_hdf5_err_,__FILE__,__LINE__);}
74
75
76
77#endif
Base class for exceptions.
Definition Exceptions.h:55
Exception(const char *message="")
Create an Exception.
Definition Exceptions.h:62
HDF5Exception(herr_t errorCode, const char *file, const int line)
Create the Exception.
Definition lm_hdf5.h:60
void printStackTrace()
Definition lm_hdf5.h:61
Definition lm_hdf5.h:49
Definition LatticeBuilder.h:56
Definition Capsule.cpp:46