ReplicateRunner.h

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/*
 * University of Illinois Open Source License
 * Copyright 2011-2018 Luthey-Schulten Group,
 * All rights reserved.
 * 
 * Developed by: Luthey-Schulten Group
 *               University of Illinois at Urbana-Champaign
 *               http://www.scs.uiuc.edu/~schulten
 * 
 * Permission is hereby granted, free of charge, to any person obtaining a copy of
 * this software and associated documentation files (the Software), to deal with 
 * the Software without restriction, including without limitation the rights to 
 * use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies 
 * of the Software, and to permit persons to whom the Software is furnished to 
 * do so, subject to the following conditions:
 * 
 * - Redistributions of source code must retain the above copyright notice, 
 * this list of conditions and the following disclaimers.
 * 
 * - Redistributions in binary form must reproduce the above copyright notice, 
 * this list of conditions and the following disclaimers in the documentation 
 * and/or other materials provided with the distribution.
 * 
 * - Neither the names of the Luthey-Schulten Group, University of Illinois at
 * Urbana-Champaign, nor the names of its contributors may be used to endorse or
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 * 
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.  IN NO EVENT SHALL 
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 *
 * Author(s): Elijah Roberts
 */
 
#ifndef LM_MAIN_REPLICATERUNNER_H_
#define LM_MAIN_REPLICATERUNNER_H_
 
#include <map>
#include <string>
#include "core/ResourceAllocator.h"
#include "me/MESolverFactory.h"
#include "ReactionModel.pb.h"
#include "DiffusionModel.pb.h"
#include "thread/Thread.h"
#include "thread/Worker.h"
 
using std::map;
using std::string;
using lm::thread::PthreadException;
using lm::thread::Worker;
using lm::me::MESolverFactory;
 
namespace lm {
namespace main {

class ReplicateRunner : public Worker
{
public:
    ReplicateRunner(int replicate, MESolverFactory solverFactory, map<string,string> * parameters, lm::io::ReactionModel * reactionModel, lm::io::DiffusionModel * diffusionModel, uint8_t * lattice, size_t latticeSize, uint8_t * latticeSites, size_t latticeSitesSize, ResourceAllocator::ComputeResources resources);
    virtual ~ReplicateRunner();
    
    virtual void wake();
    virtual int run();

    virtual int getReplicate() {return replicate;}
    virtual bool hasReplicateFinished();
    virtual int getReplicateExitCode();
    
protected:
    int replicate;
    MESolverFactory solverFactory;
    map<string,string> * parameters;
    lm::io::ReactionModel * reactionModel;
    lm::io::DiffusionModel * diffusionModel;
    uint8_t * lattice;
    size_t latticeSize;
    uint8_t * latticeSites;
    size_t latticeSitesSize;
    ResourceAllocator::ComputeResources resources;
    volatile bool replicateFinished;
    volatile int replicateExitCode;
};
 
}
}
 
#endif