Here is a list of all class members with links to the classes they belong to:

- r -

• r1 : lm::builder::Ellipse
• r2 : lm::builder::Ellipse
• r3 : lm::builder::Ellipse
• radius : lm::builder::Capsule, lm::builder::Cone, lm::builder::Cylinder, lm::builder::Hemisphere, lm::builder::Mesh, lm::builder::Sphere, pySTDLM.Cells.CapsuleCell, pySTDLM.Cells.CapsuleShellCell, pySTDLM.Cells.SphereCell
• radius1 : lm::builder::Torus
• radius2 : lm::builder::Torus
• RandomGenerator() : lm::rng::RandomGenerator, RandomGenerator
• randomPointInside() : lm::builder::bounding_box
• randomValues : lm::rng::XORWow
• randomValuesDev : lm::rng::XORWow
• rank : lm::rdme::MPIMpdRdmeSolver
• rate : jLM.Types.Reaction
• rateConst() : jLM.RDME.SpatialModel
• rc : jLM.RDME.File, jLM.RDME.Sim
• rdme : jLM.Solvers.ConstBoundaryConc
• RDMESolver() : lm::rdme::RDMESolver, RDMESolver
• reachedSpeciesLimit() : CMESolver, lm::cme::CMESolver
• reactants : jLM.Types.Reaction
• reaction() : jLM.RDME.SpatialModel
• reaction_map : jLM.CME.CMESimulation
• REACTION_TYPE : CMESolver::CompetitiveMMPropensityArgs, CMESolver::FirstOrderPropensityArgs, CMESolver::KHillPropensityArgs, CMESolver::KHillTransportPropensityArgs, CMESolver::MichaelisMentenPropensityArgs, CMESolver::NoncompetitiveMMPropensityArgs, CMESolver::SecondOrderPropensityArgs, CMESolver::SecondOrderSelfPropensityArgs, CMESolver::UncompetitiveMMPropensityArgs, CMESolver::ZerothOrderHeavisidePropensityArgs, CMESolver::ZerothOrderPropensityArgs, lm::cme::CMESolver::CompetitiveMMPropensityArgs, lm::cme::CMESolver::FirstOrderPropensityArgs, lm::cme::CMESolver::KHillPropensityArgs, lm::cme::CMESolver::KHillTransportPropensityArgs, lm::cme::CMESolver::MichaelisMentenPropensityArgs, lm::cme::CMESolver::NoncompetitiveMMPropensityArgs, lm::cme::CMESolver::SecondOrderPropensityArgs, lm::cme::CMESolver::SecondOrderSelfPropensityArgs, lm::cme::CMESolver::UncompetitiveMMPropensityArgs, lm::cme::CMESolver::ZerothOrderHeavisidePropensityArgs, lm::cme::CMESolver::ZerothOrderPropensityArgs
• reactionEvents : lm::reaction::ReactionQueue, ReactionQueue
• reactionList : jLM.JupyterDisplay.JupyterDisplayMixin, jLM.LmInteract.LmWriteMixin, jLM.RDME.File, jLM.RDME.Sim
• reactionModel : lm::main::ReplicateRunner, ReplicateRunner
• reactionModelModified : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, MpdRdmeSolver
• reactionPositions : lm::reaction::ReactionQueue, ReactionQueue
• reactionPropensities : lm::rdme::NextSubvolumeSolver
• ReactionQueue() : lm::reaction::ReactionQueue, ReactionQueue
• reactionQueue : lm::cme::NextReactionSolver, lm::rdme::NextSubvolumeSolver, lm::reaction::ReactionQueue, ReactionQueue
• reactions : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMERegion
• reactionTypes : CMESolver, lm::cme::CMESolver
• read_buffer : gpu_info
• readAttr() : lm::io::hdf5::SimulationFile, SimulationFile
• readDataset() : lm::io::hdf5::SimulationFile, SimulationFile
• rebalance() : MultiGPUMapper
• recalculateAllSiteSizes() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• recipCollisionGridSpacing : lm::builder::LatticeBuilder
• record_execution_cost() : MultiGPUMapper
• recordParameters() : CMESolver, lm::cme::CMESolver
• recordSpeciesCounts() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, lm::rdme::NextSubvolumeSolver, MpdRdmeSolver
• recv_edge() : ZDivMPIGPUMapper
• reduce_trajectory_file() : jLM.RDME.File
• refresh() : MultiGPUMapper, ZDivMultiGPUMapper
• reg : jLM.RDME.File, jLM.RDME.Sim
• region() : jLM.RDME.SpatialModel
• regionBounds : lm::builder::LatticeBuilder
• regionList : jLM.JupyterDisplay.JupyterDisplayMixin, jLM.LmInteract.LmReadMixin, jLM.LmInteract.LmWriteMixin, jLM.RDME.File, jLM.RDME.Sim
• regions : pyLM.RDME.RDMESimulation
• regionShapes : lm::builder::LatticeBuilder
• removeAllParticles() : CudaByteLattice, CudaByteLatticeExtended, Lattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaByteLatticeExtended, lm::rdme::CudaIntLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• removeObject() : lm::builder::LatticeBuilder
• removeParticleGPU() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• removeParticles() : CudaByteLattice, CudaByteLatticeExtended, Lattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaByteLatticeExtended, lm::rdme::CudaIntLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• removeReplicate() : lm::main::ResourceAllocator, ResourceAllocator
• removeSphere() : lm::builder::LatticeBuilder
• removeWorker() : lm::thread::WorkerManager, WorkerManager
• replicate : CMESolver, H5Lookup, H5MetaData, jLM.LmInteract.LmReadMixin, jLM.RDMEExtended.FileExtended, lm::cme::CMESolver, lm::main::ReplicateRunner, ReplicateRunner
• replicateExists() : lm::io::hdf5::SimulationFile, SimulationFile
• replicateExitCode : lm::main::ReplicateRunner, ReplicateRunner
• replicateFinished : lm::main::ReplicateRunner, ReplicateRunner
• ReplicateHandles() : lm::io::hdf5::SimulationFile::ReplicateHandles, SimulationFile::ReplicateHandles
• ReplicateRunner() : lm::main::ReplicateRunner, ReplicateRunner
• replicates : jLM.Analysis.TrajAnalysisMixin, jLM.CME.CMESimulation, jLM.LmInteract.LmReadMixin, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• reserveCpuCore() : lm::main::ResourceAllocator, ResourceAllocator
• reservedCpuCores : lm::main::ResourceAllocator, ResourceAllocator
• resizeLattice() : jLM.RDME.SpatialModel
• ResourceAllocator() : lm::main::ResourceAllocator, ResourceAllocator
• resources : CMESolver, lm::cme::CMESolver, lm::main::ReplicateRunner, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, ReplicateRunner
• returnAvailable : lm::main::DataOutputQueue
• returnList : lm::main::DataOutputQueue
• returnMutex : lm::main::DataOutputQueue
• reverse_reaction_map : jLM.CME.CMESimulation
• RL : lm::rdme::RDMESolver, RDMESolver
• rng : CMESolver, lm::builder::LatticeBuilder, lm::cme::CMESolver, lm::cme::FluctuatingNRSolver::OUPropensityArgs, lm::cme::SelfRegulatingGeneSwitch::OUKHillPropensityArgs
• rngNext : lm::cme::FluctuatingNRSolver::OUPropensityArgs, lm::cme::SelfRegulatingGeneSwitch::OUKHillPropensityArgs
• rotation : lm::builder::Shape
• rowMajorByteSerialize() : Lattice, lm::rdme::Lattice
• rowMajorByteSerializeSites() : Lattice, lm::rdme::Lattice
• rowMajorIntSerialize() : Lattice, lm::rdme::Lattice
• run() : jLM.CME.CMESimulation, jLM.RDME.SpatialModel, jLM.RDMEExtended.SimExtended, lm::main::CheckpointSignaler, lm::main::LocalDataOutputWorker, lm::main::ReplicateRunner, lm::main::SignalHandler, lm::thread::Thread, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation, ReplicateRunner
• run_next_timestep() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver
• run_thread() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• runConstantProtein() : lm::cme::TwoStateHillSwitch
• runGeometricProtein() : lm::cme::TwoStateHillSwitch
• runMPI() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• runner : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params
• running : lm::thread::Thread
• runSizeAwareTimestep() : lm::MpdRdmeSolverExtended
• runSolver() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• runStandardTimestep() : lm::MpdRdmeSolverExtended
• runTimestep() : lm::MpdRdmeSolverExtended, lm::rdme::IntMpdRdmeSolver, lm::rdme::IntMpdRdmeSolverExtended, lm::rdme::MpdRdmeSolver, lm::rdme::MpdTestHarness, MpdRdmeSolver
• rx_finish : lm::rdme::MPIMpdRdmeSolver, segmentDescriptor
• rxnRateList : jLM.JupyterDisplay.JupyterDisplayMixin, jLM.LmInteract.LmWriteMixin, jLM.RDME.File, jLM.RDME.Sim