CMEPostProcessing.py File Reference

Namespaces
namespace	jLM
namespace	jLM.CMEPostProcessing

Functions
	jLM.CMEPostProcessing.openLMFile (filename)
	jLM.CMEPostProcessing.closeLMFile (f)
	jLM.CMEPostProcessing.showTraceFromFile (filename, species, replicate, **kwargs)
	jLM.CMEPostProcessing.plotTraceFromFile (filename, species, replicate, outfile, **kwargs)
	jLM.CMEPostProcessing.plotCMEReactionNetwork (sim, filename, withRxnNodes=False, collapseReversible=False)
	jLM.CMEPostProcessing.showTrace (f, species, replicate, **kwargs)
	jLM.CMEPostProcessing.plotTrace (f, species=None, replicate=1, filename=None, **kwargs)
	jLM.CMEPostProcessing.showAvgVarFromFile (filename, species, **kwargs)
	jLM.CMEPostProcessing.plotAvgVarFromFile (filename, species, outfile, **kwargs)
	jLM.CMEPostProcessing.showAvgVar (f, species, **kwargs)
	jLM.CMEPostProcessing.plotAvgVar (f, species=None, filename=None, **kwargs)
	jLM.CMEPostProcessing.getOccupancyKymograph (f, species=None, replicate=1)
	jLM.CMEPostProcessing.plotOccupancyKymograph (f, species=None, replicate=1, filename=None)
	jLM.CMEPostProcessing.showOccupancyKymograph (f, species=None, replicate=1)
	jLM.CMEPostProcessing.plotPhaseSpace (f, species=None, replicate=1, withHistogram=False)
	jLM.CMEPostProcessing.getSpecies (f)
	jLM.CMEPostProcessing.getTimesteps (f)
	jLM.CMEPostProcessing.getSpecieTrace (f, specie, replicate=None, doublingTime=None)
	jLM.CMEPostProcessing.getAvgVarTrace (f, specie, doublingTime=None)
	jLM.CMEPostProcessing.getHistogram (f, species)
	jLM.CMEPostProcessing.getPhaseSpace (f, species, replicate)
	jLM.CMEPostProcessing.getNumTrajectories (f)
	jLM.CMEPostProcessing.getTrajectory (f, replicate, specie)