pySTDLM.SBMLReader Namespace Reference

Functions
	importSBMLModel (filename)
	Helper Functions ##.
	importSBMLModelL3V1 (model, sim, region=None)
	getRate (rxn, rcts, prds, sim, globalP, globalPV)
	readSBMLtoCME (sim, filename)
	readSBMLtoRDME (sim, filename)
	readSBMLtoRegion (sim, region, filename)

Function Documentation

getRate()

pySTDLM.SBMLReader.getRate	(		rxn,
			rcts,
			prds,
			sim,
			globalP,
			globalPV )

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importSBMLModel()

pySTDLM.SBMLReader.importSBMLModel

(

filename

)

Helper Functions ##.

importSBMLModelL3V1()

pySTDLM.SBMLReader.importSBMLModelL3V1	(		model,
			sim,
			region = None )

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readSBMLtoCME()

pySTDLM.SBMLReader.readSBMLtoCME	(		sim,
			filename )

Read an SBML file for the reaction model for a CME simulation

Args:
    sim:
        A CMESimulation object
    filename:
        A SBML filename/filepath

Returns:
    The simulation object

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readSBMLtoRDME()

pySTDLM.SBMLReader.readSBMLtoRDME	(		sim,
			filename )

Read an SBML file for the reaction model for a RDME simulation

Args:
    sim:
        A RDMESimulation object
    filename:
        A SBML filename/filepath

Returns:
    The simulation object

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readSBMLtoRegion()

pySTDLM.SBMLReader.readSBMLtoRegion	(		sim,
			region,
			filename )

Read an SBML file for the reaction model into a specific region of the RDME simulation

Args:
    sim:
        A RDMESimulation object
    region:
        A region name that already exists in the RDMESimulation
    filename:
        A SBML filename/filepath

Returns:
    The simulation object

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