Lattice Microbes 2.5
This is for whole cell modeling
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NetworkVisualization.py File Reference

Namespaces

namespace  pySTDLM
namespace  pySTDLM.NetworkVisualization

Functions

 pySTDLM.NetworkVisualization.plotReactionNetwork (sim, filename, collapseReversible=False)
 pySTDLM.NetworkVisualization.plotCMEReactionNetwork (sim, filename, withRxnNodes=False, collapseReversible=False)
 pySTDLM.NetworkVisualization.plotRDMEReactionNetwork (sim, filename, collapseReversible=False)
 pySTDLM.NetworkVisualization.plotCMEDynamicReactionNetwork (sim, filename, outfile, stride=1, showMax=False, showMin=False, threshold=-1, replicate=1)

Variables

bool pySTDLM.NetworkVisualization.hasGexf = True