Lattice Microbes 2.5
This is for whole cell modeling
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ImageAnalysis.py File Reference

Classes

class  jLM.ImageAnalysis.SvgContext

Namespaces

namespace  jLM
namespace  jLM.ImageAnalysis

Functions

 jLM.ImageAnalysis._makeMaskPath (binarySlice)
 jLM.ImageAnalysis.mplBoundaryPath (binarySlice, faceColor='none', edgeColor='r', extent=None)
 jLM.ImageAnalysis._processImgToDisplay (img, cmap, scl, vmin, vmax, mode='rgba')
 jLM.ImageAnalysis.imshow (img, scl=None, cmap="inferno", vmin=None, vmax=None, xlines=[], ylines=[])
 jLM.ImageAnalysis.alphaBlend (rgbaBottom, rgbaTop)
 jLM.ImageAnalysis._interpretColor (c)
 jLM.ImageAnalysis.markup (imgIn, scl=4, cmap="inferno", vmin=None, vmax=None, markerColor="blue", markerWeight=1, markerSize=2, markers=None, mask=None, maskColor="green", maskWeight=1, svgFile=None)