Here is a list of all functions with links to the classes they belong to:

- s -

• save() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• scale() : lm::builder::vector
• schedule_recv() : MultiGPUMapper, ZDivMultiGPUMapper
• schedule_send() : MultiGPUMapper, ZDivMultiGPUMapper
• se26() : jLM.RegionBuilder.RegionBuilder
• se6() : jLM.RegionBuilder.RegionBuilder
• secondOrderPropensity() : CMESolver, lm::cme::CMESolver
• SecondOrderPropensityArgs() : CMESolver::SecondOrderPropensityArgs, lm::cme::CMESolver::SecondOrderPropensityArgs
• secondOrderSelfPropensity() : CMESolver, lm::cme::CMESolver
• SecondOrderSelfPropensityArgs() : CMESolver::SecondOrderSelfPropensityArgs, lm::cme::CMESolver::SecondOrderSelfPropensityArgs
• SelfRegulatingGeneSwitch() : lm::cme::SelfRegulatingGeneSwitch
• send_edge() : ZDivMPIGPUMapper
• set_affinity() : MultiGPUMapper
• set_particle_size() : jLM.ParticleSizeSupport.ParticleSizeMixin, jLM.ParticleSizeSupport.ParticleSizeValidator
• set_verbosity() : jLM.RDMEExtended.SimExtended
• setAffinity() : lm::thread::Thread
• setBoundary() : jLM.Solvers.ConstBoundaryConc
• setCenter() : lm::builder::Ellipse, lm::builder::Mesh, lm::builder::Sphere, lm::builder::Torus
• setCurrentDevice() : lm::CUDA
• setDefaultDiffusionRate() : pyLM.RDME.RDMERegion
• setDiffusionModel() : lm::io::hdf5::SimulationFile, lm::rdme::RDMESolver, RDMESolver, SimulationFile
• setDiffusionModelLattice() : lm::io::hdf5::SimulationFile, SimulationFile
• setDiffusionRate() : pyLM.RDME.RDMERegion
• setFirstPassageTimes() : lm::io::hdf5::SimulationFile, SimulationFile
• setFptTrackingList() : CMESolver, lm::cme::CMESolver
• setFromRowMajorByteData() : CudaByteLattice, Lattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaIntLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• setFromRowMajorData() : lm::rdme::IntLattice
• setHookInterval() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• setInstance() : lm::main::DataOutputQueue
• setLatticeData() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::RDMESolver, RDMESolver
• setLatticeSite() : pyLM.RDME.RDMESimulation
• setLatticeSitesData() : lm::rdme::RDMESolver, RDMESolver
• setLatticeWriteInterval() : pyLM.RDME.RDMESimulation
• setMaximumTimestep() : jLM.RDME.SpatialModel
• setModelPropensityFunction() : CMESolver, lm::cme::CMESolver
• setNextCheckpointTime() : lm::main::CheckpointSignaler
• setOverflowHandler() : pyLM.RDME.RDMESimulation
• setParameter() : lm::io::hdf5::SimulationFile, SimulationFile
• setParticleSize() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended, lm::rdme::ParticleSizeManager
• setParticleSizes() : lm::MpdRdmeSolverExtended, lm::rdme::IntMpdRdmeSolverExtended
• setParticleSizesFromDict() : lm::rdme::ParticleSizeManager
• setRandomSeed() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• setReactionModel() : CMESolver, lm::cme::CMESolver, lm::cme::FluctuatingNRSolver, lm::cme::LacHillSwitch, lm::io::hdf5::SimulationFile, SimulationFile
• setReactionRate() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, MpdRdmeSolver
• setReactionRateCME() : CMESolver, lm::cme::CMESolver
• setRegions() : pySTDLM.Cells.CellShape
• setReplicate() : jLM.LmInteract.LmReadMixin
• setSimulationTime() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• setSitesFromRowMajorByteData() : Lattice, lm::rdme::ByteLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• setSiteType() : CudaByteLattice, Lattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaIntLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• setSizeCheckingEnabled() : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• setSolver() : lm::me::MESolverFactory, MESolverFactory
• setSpatialModel() : lm::io::hdf5::SimulationFile, SimulationFile
• setSpeciesLowerLimit() : CMESolver, lm::cme::CMESolver
• setSpeciesUpperLimit() : CMESolver, lm::cme::CMESolver
• setTimestep() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• setTransitionRate() : pyLM.RDME.RDMESimulation
• setTwoWayTransitionRate() : pyLM.RDME.RDMESimulation
• setupModelsOnDevice() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• setWriteInterval() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• Shape() : lm::builder::Shape
• show() : jLM.Types.Species
• showAllParameters() : jLM.JupyterDisplay.JupyterDisplayMixin
• showAllSpecies() : jLM.JupyterDisplay.JupyterDisplayMixin
• showBinaryLattices() : jLM.RegionBuilder.RegionBuilder
• showDiffusionConstants() : jLM.JupyterDisplay.JupyterDisplayMixin
• showRateConstants() : jLM.JupyterDisplay.JupyterDisplayMixin
• showReactions() : jLM.JupyterDisplay.JupyterDisplayMixin
• showRegion() : jLM.JupyterDisplay.JupyterDisplayMixin
• showRegionStack() : jLM.JupyterDisplay.JupyterDisplayMixin
• showSpecies() : jLM.JupyterDisplay.JupyterDisplayMixin
• showStack() : jLM.RegionBuilder.RegionBuilder
• SignalHandler() : lm::main::SignalHandler
• SimulationFile() : lm::io::hdf5::SimulationFile, SimulationFile
• simulationTime() : jLM.RDME.SpatialModel
• siteVolume() : pyLM.RDME.RDMESimulation
• size_validator() : jLM.ParticleSizeSupport.ParticleSizeMixin
• species() : jLM.RDME.SpatialModel, jLM.RDMEExtended.SimExtended
• speciesWriteInterval() : jLM.RDME.SpatialModel
• Sphere() : lm::builder::Sphere
• sphereStructElem() : jLM.RegionBuilder.RegionBuilder
• spoke() : jLM.RegionBuilder.RegionBuilder
• stage_in() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• stage_in_from_slave() : ZDivMPIGPUMapper
• stage_in_real() : ZDivMPIGPUMapper, ZDivMultiGPUMapper
• stage_in_sites() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• stage_out() : MultiGPUMapper, ZDivMPIGPUMapper, ZDivMultiGPUMapper
• stage_out_real() : ZDivMPIGPUMapper, ZDivMultiGPUMapper
• stage_out_to_master() : ZDivMPIGPUMapper
• start() : lm::thread::Thread
• start_new_paragraph() : doxy2swig.Doxy2SWIG
• start_threads() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• startCheckpointing() : lm::main::CheckpointSignaler
• stochasticRate() : jLM.Types.RateConst
• stop() : lm::thread::Thread
• stop_threads() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• stopCheckpointing() : lm::main::CheckpointSignaler
• stopWorkers() : lm::thread::WorkerManager, WorkerManager
• str() : jLM.ColorGen.ColorGen
• strFg() : jLM.ColorGen.ColorGen
• subnode_parse() : doxy2swig.Doxy2SWIG
• surround_parse() : doxy2swig.Doxy2SWIG
• swapSizeSrcDest() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• swapSrcDest() : CudaByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaIntLattice
• syncSiteSizesFromGPU() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended