Lattice Microbes 2.5
This is for whole cell modeling
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Globals.h File Reference
#include <string>
#include <vector>
#include "core/Types.h"
#include "core/Exceptions.h"
#include "me/MESolverFactory.h"
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Variables

vector< string > cmdline_parameters
string functionOption
string simulationFilename
vector< int > replicates
time_t checkpointInterval
volatile bool globalAbort
lm::me::MESolverFactory solverFactory
int numberCpuCores
float cpuCoresPerReplicate
bool shouldReserveOutputCore

Variable Documentation

◆ checkpointInterval

time_t checkpointInterval
extern

The interval at which the results file should be checkpointed.

◆ cmdline_parameters

vector<string> cmdline_parameters
extern

◆ cpuCoresPerReplicate

float cpuCoresPerReplicate
extern

The number of cpu cores to assign per replicate (can be a fraction, e.g., 1/2, 1/4, etc).

◆ functionOption

string functionOption
extern

The function being performed.

◆ globalAbort

volatile bool globalAbort
extern

If a global abort signal has been received.

◆ numberCpuCores

int numberCpuCores
extern

The number of cpu cores assigned to each process.

◆ replicates

vector<int> replicates
extern

The number of replicates of the simulation that should be performed.

◆ shouldReserveOutputCore

bool shouldReserveOutputCore
extern

Whether we should reserve a core for the output thread.

◆ simulationFilename

string simulationFilename
extern

The name of the file containing the simulation.

◆ solverFactory

lm::me::MESolverFactory solverFactory
extern

The solver to use for the simulations.