| Lattice Microbes 2.5
    This is for whole cell modeling | 
A DataOutputQueue that works for MPI jobs across various different nodes that outputs only on the "master" thread. More...
#include <MPIRemoteDataOutputQueue.h>
| Public Member Functions | |
| MPIRemoteDataOutputQueue () | |
| Create a new MPIRemoteDataOutputQueue. | |
| virtual | ~MPIRemoteDataOutputQueue () | 
| virtual bool | isEmpty () | 
| Tell if the queue is empty. | |
| virtual size_t | popDataSetIntoBuffer (void *buffer, size_t bufferSize) | 
| Pop data from queue and write to the buffer. | |
| Public Member Functions inherited from lm::main::DataOutputQueue | |
| DataOutputQueue () | |
| Create a DataOutputQueue. | |
| virtual | ~DataOutputQueue () | 
| virtual void | pushDataSet (uint type, uint replicate, ::google::protobuf::Message *message, void *payload=NULL, size_t payloadSize=0, void(*payloadSerializer)(void *, void *, size_t)=NULL) | 
| Put some data on the queue to be output. | |
| virtual void | pushDataSet (void *data, size_t dataSize) | 
| Put some data on the queue. | |
| virtual void | pushDataSet (DataSet *dataSet) | 
| Put a DataSet on the queue. | |
| virtual void | pushDataSet (const H5MetaData md, uint replicate, void *payload) | 
| template<typename T> | |
| void | queryH5 (const H5Lookup::Mode mode, H5MetaData &hdr, std::vector< T > &payload, const uint replicate, const std::string path, const std::string attr="") | 
| template<typename T> | |
| T | queryH5attr (const uint replicate, const std::string path, const std::string attr) | 
| Additional Inherited Members | |
| Static Public Member Functions inherited from lm::main::DataOutputQueue | |
| static void | setInstance (DataOutputQueue *instance) | 
| Sets the current DataOutputQueue that is active. | |
| static DataOutputQueue * | getInstance () | 
| Get the current DataOuputQueue tht is active. | |
| Static Public Attributes inherited from lm::main::DataOutputQueue | |
| static const uint | SPECIES_COUNTS = 10 | 
| static const uint | FIRST_PASSAGE_TIMES = 11 | 
| static const uint | PARAMETER_VALUES = 12 | 
| static const uint | BYTE_LATTICE = 20 | 
| static const uint | INT_LATTICE = 21 | 
| static const uint | SITE_LATTICE = 22 | 
| static const uint | ARBITRARY_H5 = 23 | 
| static const uint | ARBITRARY_H5_READ = 24 | 
| Protected Attributes inherited from lm::main::DataOutputQueue | |
| pthread_mutex_t | dataMutex | 
| queue< DataSet * > | dataQueue | 
| pthread_mutex_t | returnMutex | 
| std::list< DataSet * > | returnList | 
| pthread_cond_t | returnAvailable | 
A DataOutputQueue that works for MPI jobs across various different nodes that outputs only on the "master" thread.
| 
 | inline | 
Create a new MPIRemoteDataOutputQueue.
| 
 | inlinevirtual | 
| 
 | virtual | 
Tell if the queue is empty.
| 
 | virtual | 
Pop data from queue and write to the buffer.
| buffer | The data buffer into which the next DataSet object should be written | 
| bufferSize | The size of the buffer |