Here is a list of all variables with links to the classes they belong to:

- s -

• S : CMESolver, lm::cme::CMESolver
• s1i : CMESolver::SecondOrderPropensityArgs, lm::cme::CMESolver::SecondOrderPropensityArgs
• s2i : CMESolver::SecondOrderPropensityArgs, lm::cme::CMESolver::SecondOrderPropensityArgs
• secondOrder : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, MpdRdmeSolver
• secondOrderSize : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, MpdRdmeSolver
• seed : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, lm::rng::RandomGenerator, MpdRdmeSolver, RandomGenerator
• segment : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver
• shape : H5MetaData, jLM.RDME.SpatialModel, jLM.RegionBuilder.RegionBuilder
• shape1 : lm::builder::Difference, lm::builder::Intersection, lm::builder::Union
• shape2 : lm::builder::Difference, lm::builder::Intersection, lm::builder::Union
• shapes : lm::builder::UnionSet
• shapeType : lm::builder::Shape
• si : CMESolver::CompetitiveMMPropensityArgs, CMESolver::FirstOrderPropensityArgs, CMESolver::KHillPropensityArgs, CMESolver::KHillTransportPropensityArgs, CMESolver::MichaelisMentenPropensityArgs, CMESolver::NoncompetitiveMMPropensityArgs, CMESolver::SecondOrderSelfPropensityArgs, CMESolver::UncompetitiveMMPropensityArgs, lm::cme::CMESolver::CompetitiveMMPropensityArgs, lm::cme::CMESolver::FirstOrderPropensityArgs, lm::cme::CMESolver::KHillPropensityArgs, lm::cme::CMESolver::KHillTransportPropensityArgs, lm::cme::CMESolver::MichaelisMentenPropensityArgs, lm::cme::CMESolver::NoncompetitiveMMPropensityArgs, lm::cme::CMESolver::SecondOrderSelfPropensityArgs, lm::cme::CMESolver::UncompetitiveMMPropensityArgs, lm::cme::TwoStateHillSwitch::KHillPropensityArgs
• sim : jLM.ParticleSizeSupport.ParticleSizeValidator
• simulation_barrier : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• simulationsGroup : lm::io::hdf5::SimulationFile, SimulationFile
• simulationTime : jLM.LmInteract.LmReadMixin, jLM.LmInteract.LmWriteMixin
• SITE_LATTICE : lm::main::DataOutputQueue
• siteLattice : jLM.JupyterDisplay.JupyterDisplayMixin, jLM.LmInteract.LmWriteMixin, jLM.ParticleSizeSupport.ParticleSizeMixin, jLM.RDME.SpatialModel
• siteNAV : jLM.RDME.SpatialModel
• siteSizes_ : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• siteType : lm::builder::LatticeBuilder::ParticlePlacement
• siteTypes : lm::rdme::ByteLattice, lm::rdme::IntLattice, pyLM.RDME.RDMESimulation
• siteV : jLM.RDME.SpatialModel
• size : Lattice, lm::main::DataOutputQueue::DataSet, lm::rdme::Lattice, neighbor_buffer
• sizeCheckingEnabled_ : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• sizeManager_ : CudaByteLatticeExtended, lm::rdme::ByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• solverFactory : lm::main::ReplicateRunner, ReplicateRunner
• sp : jLM.RDME.File, jLM.RDME.Sim
• space_re : doxy2swig.Doxy2SWIG
• spacing : Lattice, lm::rdme::Lattice
• species : CMESolver::FPTTracking, CMESolver::SpeciesLimit, lm::cme::CMESolver::FPTTracking, lm::cme::CMESolver::SpeciesLimit
• SPECIES_COUNTS : lm::main::DataOutputQueue
• species_id : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• speciesCounts : CMESolver, jLM.LmInteract.LmReadMixin, lm::cme::CMESolver
• speciesCountsDataset : lm::io::hdf5::SimulationFile::ReplicateHandles, SimulationFile::ReplicateHandles
• speciesCountTimes : jLM.LmInteract.LmReadMixin
• speciesCountTimesDataset : lm::io::hdf5::SimulationFile::ReplicateHandles, SimulationFile::ReplicateHandles
• speciesLimits : CMESolver, lm::cme::CMESolver
• speciesList : jLM.LmInteract.LmReadMixin, jLM.ParticleSizeSupport.ParticleSizeMixin, jLM.RDME.File, jLM.RDME.Sim
• speciesWriteInterval : jLM.LmInteract.LmReadMixin, jLM.LmInteract.LmWriteMixin
• start_barrier : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• state : lm::rng::XORShift, lm::rng::XORWow
• stop_barrier : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• storedVolume : lm::builder::Difference, lm::builder::Intersection, lm::builder::Union, lm::builder::UnionSet
• stream : lm::rng::XORWow
• stream1 : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver, segmentDescriptor
• stream2 : lm::rdme::gpu_worker_thread_int_params, lm::rdme::gpu_worker_thread_params, lm::rdme::MPIMpdRdmeSolver, segmentDescriptor
• subversion : lm::MPI
• surface : jLM.ImageAnalysis.SvgContext
• symmetry : lm::builder::Difference