Here is a list of all functions with links to the classes they belong to:

- r -

• RandomGenerator() : lm::rng::RandomGenerator, RandomGenerator
• randomPointInside() : lm::builder::bounding_box
• rateConst() : jLM.RDME.SpatialModel
• RDMESolver() : lm::rdme::RDMESolver, RDMESolver
• reachedSpeciesLimit() : CMESolver, lm::cme::CMESolver
• reaction() : jLM.RDME.SpatialModel
• ReactionQueue() : lm::reaction::ReactionQueue, ReactionQueue
• readAttr() : lm::io::hdf5::SimulationFile, SimulationFile
• readDataset() : lm::io::hdf5::SimulationFile, SimulationFile
• rebalance() : MultiGPUMapper
• recalculateAllSiteSizes() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• record_execution_cost() : MultiGPUMapper
• recordParameters() : CMESolver, lm::cme::CMESolver
• recordSpeciesCounts() : lm::rdme::IntMpdRdmeSolver, lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver, lm::rdme::NextSubvolumeSolver, MpdRdmeSolver
• recv_edge() : ZDivMPIGPUMapper
• reduce_trajectory_file() : jLM.RDME.File
• refresh() : MultiGPUMapper, ZDivMultiGPUMapper
• region() : jLM.RDME.SpatialModel
• removeAllParticles() : CudaByteLattice, CudaByteLatticeExtended, Lattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaByteLatticeExtended, lm::rdme::CudaIntLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• removeObject() : lm::builder::LatticeBuilder
• removeParticleGPU() : CudaByteLatticeExtended, lm::rdme::CudaByteLatticeExtended
• removeParticles() : CudaByteLattice, CudaByteLatticeExtended, Lattice, lm::rdme::ByteLattice, lm::rdme::CudaByteLattice, lm::rdme::CudaByteLatticeExtended, lm::rdme::CudaIntLattice, lm::rdme::IntLattice, lm::rdme::Lattice
• removeReplicate() : lm::main::ResourceAllocator, ResourceAllocator
• removeSphere() : lm::builder::LatticeBuilder
• removeWorker() : lm::thread::WorkerManager, WorkerManager
• replicateExists() : lm::io::hdf5::SimulationFile, SimulationFile
• ReplicateHandles() : lm::io::hdf5::SimulationFile::ReplicateHandles, SimulationFile::ReplicateHandles
• ReplicateRunner() : lm::main::ReplicateRunner, ReplicateRunner
• reserveCpuCore() : lm::main::ResourceAllocator, ResourceAllocator
• resizeLattice() : jLM.RDME.SpatialModel
• ResourceAllocator() : lm::main::ResourceAllocator, ResourceAllocator
• rowMajorByteSerialize() : Lattice, lm::rdme::Lattice
• rowMajorByteSerializeSites() : Lattice, lm::rdme::Lattice
• rowMajorIntSerialize() : Lattice, lm::rdme::Lattice
• run() : jLM.CME.CMESimulation, jLM.RDME.SpatialModel, jLM.RDMEExtended.SimExtended, lm::main::CheckpointSignaler, lm::main::LocalDataOutputWorker, lm::main::ReplicateRunner, lm::main::SignalHandler, lm::thread::Thread, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation, ReplicateRunner
• run_next_timestep() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver, lm::rdme::MPIMpdRdmeSolver
• run_thread() : lm::rdme::MGPUIntMpdRdmeSolver, lm::rdme::MGPUMpdRdmeSolver
• runConstantProtein() : lm::cme::TwoStateHillSwitch
• runGeometricProtein() : lm::cme::TwoStateHillSwitch
• runMPI() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• runSizeAwareTimestep() : lm::MpdRdmeSolverExtended
• runSolver() : jLM.CME.CMESimulation, pyLM.CME.CMESimulation, pyLM.RDME.RDMESimulation
• runStandardTimestep() : lm::MpdRdmeSolverExtended
• runTimestep() : lm::MpdRdmeSolverExtended, lm::rdme::IntMpdRdmeSolver, lm::rdme::IntMpdRdmeSolverExtended, lm::rdme::MpdRdmeSolver, lm::rdme::MpdTestHarness, MpdRdmeSolver