Lattice Microbes 2.5
This is for whole cell modeling
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TwoStateExpression.h
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1/*
2 * University of Illinois Open Source License
3 * Copyright 2011-2018 Luthey-Schulten Group,
4 * All rights reserved.
5 *
6 * Developed by: Luthey-Schulten Group
7 * University of Illinois at Urbana-Champaign
8 * http://www.scs.uiuc.edu/~schulten
9 *
10 * Permission is hereby granted, free of charge, to any person obtaining a copy of
11 * this software and associated documentation files (the Software), to deal with
12 * the Software without restriction, including without limitation the rights to
13 * use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
14 * of the Software, and to permit persons to whom the Software is furnished to
15 * do so, subject to the following conditions:
16 *
17 * - Redistributions of source code must retain the above copyright notice,
18 * this list of conditions and the following disclaimers.
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20 * - Redistributions in binary form must reproduce the above copyright notice,
21 * this list of conditions and the following disclaimers in the documentation
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24 * - Neither the names of the Luthey-Schulten Group, University of Illinois at
25 * Urbana-Champaign, nor the names of its contributors may be used to endorse or
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37 * Author(s): Elijah Roberts
38 */
39
40#ifndef LM_CME_TWOSTATEEXPRESSION_H_
41#define LM_CME_TWOSTATEEXPRESSION_H_
42
43#include <cmath>
44#include <map>
45#include <string>
47
48using std::string;
49using std::map;
50
51namespace lm {
52namespace cme {
53
55{
56public:
58 virtual ~TwoStateExpression();
59 virtual bool needsReactionModel() {return false;}
60 virtual bool needsDiffusionModel() {return false;}
61 virtual void generateTrajectory();
62};
63
64}
65}
66
67#endif
GillespieDSolver()
Definition GillespieDSolver.cpp:79
virtual void generateTrajectory()
Actually run the simulation.
Definition TwoStateExpression.cpp:72
virtual ~TwoStateExpression()
Definition TwoStateExpression.cpp:68
virtual bool needsDiffusionModel()
Tells whether the solver needs a reaction model.
Definition TwoStateExpression.h:60
virtual bool needsReactionModel()
Tells whether the solver needs a reaction model.
Definition TwoStateExpression.h:59
TwoStateExpression()
Definition TwoStateExpression.cpp:63
Definition CMESolver.cpp:72
Definition Capsule.cpp:46