Lattice Microbes 2.5
This is for whole cell modeling
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lm::rdme::CudaByteLattice Member List

This is the complete list of members for lm::rdme::CudaByteLattice, including all inherited members.

addParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particle)lm::rdme::CudaByteLatticevirtual
addParticle(lattice_size_t index, particle_t particle)lm::rdme::CudaByteLatticevirtual
allocateCudaMemory()lm::rdme::CudaByteLatticeprotectedvirtual
allocateMemory()lm::rdme::ByteLatticeprotectedvirtual
ByteLattice(lattice_coord_t size, si_dist_t spacing, uint particlesPerSite)lm::rdme::ByteLattice
ByteLattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing, uint particlesPerSite)lm::rdme::ByteLattice
copyFromGPU()lm::rdme::CudaByteLatticevirtual
copyNativeToRowMajorByte(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, uint particlesPerSite, size_t bufferSize)lm::rdme::ByteLatticestatic
copyRowMajorByteToNative(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, uint particlesPerSite, size_t bufferSize)lm::rdme::ByteLatticestatic
copySites(void *destBuffer, size_t latticeSize)lm::rdme::ByteLattice
copySitesNativeToRowMajorByte(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, size_t bufferSize)lm::rdme::ByteLatticestatic
copySitesRowMajorByteToNative(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, size_t bufferSize)lm::rdme::ByteLatticestatic
copyToGPU()lm::rdme::CudaByteLatticevirtual
CudaByteLattice(lattice_coord_t size, si_dist_t spacing, uint particlesPerSite)lm::rdme::CudaByteLattice
CudaByteLattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing, uint particlesPerSite)lm::rdme::CudaByteLattice
cudaParticleslm::rdme::CudaByteLatticeprotected
cudaParticlesCurrentlm::rdme::CudaByteLatticeprotected
cudaParticlesSizelm::rdme::CudaByteLatticeprotected
cudaSiteTypeslm::rdme::CudaByteLatticeprotected
cudaSiteTypesSizelm::rdme::CudaByteLatticeprotected
deallocateCudaMemory()lm::rdme::CudaByteLatticeprotectedvirtual
deallocateMemory()lm::rdme::ByteLatticeprotectedvirtual
findParticles(particle_t minParticleType, particle_t maxParticleType)lm::rdme::ByteLatticevirtual
getGPUMemoryDest()lm::rdme::CudaByteLatticevirtual
getGPUMemorySiteTypes()lm::rdme::CudaByteLatticevirtual
getGPUMemorySrc()lm::rdme::CudaByteLatticevirtual
getLatticeMemorySize() constlm::rdme::ByteLatticevirtual
getMaxOccupancy() constlm::rdme::ByteLatticevirtual
getMaxParticle() constlm::rdme::ByteLatticevirtual
getMaxSiteType() constlm::rdme::ByteLatticevirtual
getNearbySites(lattice_size_t xc, lattice_size_t yc, lattice_size_t zc, uint minDistance, uint maxDistance)lm::rdme::Lattice
getNeighboringSites(lattice_size_t index, lattice_size_t *neighboringIndices)lm::rdme::ByteLatticevirtual
getNumberSites() constlm::rdme::Latticevirtual
getOccupancy(lattice_size_t x, lattice_size_t y, lattice_size_t z) constlm::rdme::ByteLatticevirtual
getOccupancy(lattice_size_t subvolume) constlm::rdme::ByteLatticevirtual
getParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_size_t particleIndex) constlm::rdme::ByteLatticevirtual
getParticle(lattice_size_t subvolume, site_size_t particleIndex) constlm::rdme::ByteLatticevirtual
getParticleCounts()lm::rdme::ByteLatticevirtual
getParticleLatticeView(uint8_t **particleLattice, int *Nw, int *Nz, int *Ny, int *Nx, int *Np)lm::rdme::CudaByteLatticevirtual
getParticleMemorySize() constlm::rdme::CudaByteLatticeinlinevirtual
getParticlesMemory()lm::rdme::ByteLatticeprotectedvirtual
getSiteLatticeView(uint8_t **siteLattice, int *Nz, int *Ny, int *Nx)lm::rdme::CudaByteLatticevirtual
getSitesMemory()lm::rdme::ByteLatticeprotectedvirtual
getSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z) constlm::rdme::ByteLatticevirtual
getSiteType(lattice_size_t subvolume) constlm::rdme::ByteLatticevirtual
getSize() constlm::rdme::Latticevirtual
getSpacing() constlm::rdme::Latticevirtual
getXSize() constlm::rdme::Latticevirtual
getYSize() constlm::rdme::Latticevirtual
getZSize() constlm::rdme::Latticevirtual
isGPUMemorySynchedlm::rdme::CudaByteLatticeprotected
Lattice(lattice_coord_t size, si_dist_t spacing)lm::rdme::Lattice
Lattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing)lm::rdme::Lattice
nativeSerialize(void *destBuffer, void *lattice, size_t latticeSize)lm::rdme::ByteLatticestatic
nativeSerializeSites(void *destBuffer, void *lattice, size_t latticeSize)lm::rdme::ByteLatticestatic
numberSiteslm::rdme::Latticeprotected
particleslm::rdme::ByteLatticeprotected
print() constlm::rdme::Latticevirtual
removeAllParticles()lm::rdme::CudaByteLatticevirtual
removeParticles(lattice_size_t x, lattice_size_t y, lattice_size_t z)lm::rdme::CudaByteLatticevirtual
removeParticles(lattice_size_t index)lm::rdme::CudaByteLatticevirtual
rowMajorByteSerialize(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
rowMajorByteSerializeSites(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
rowMajorIntSerialize(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
setFromRowMajorByteData(void *buffer, size_t bufferSize)lm::rdme::CudaByteLatticevirtual
setSitesFromRowMajorByteData(void *buffer, size_t bufferSize)lm::rdme::ByteLatticevirtual
setSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_t site)lm::rdme::CudaByteLatticevirtual
setSiteType(lattice_size_t index, site_t site)lm::rdme::CudaByteLatticevirtual
siteTypeslm::rdme::ByteLatticeprotected
sizelm::rdme::Latticeprotected
spacinglm::rdme::Latticeprotected
swapSrcDest()lm::rdme::CudaByteLatticevirtual
wordsPerSitelm::rdme::ByteLatticeprotected
~ByteLattice()lm::rdme::ByteLatticevirtual
~CudaByteLattice()lm::rdme::CudaByteLatticevirtual
~Lattice()lm::rdme::Latticevirtual