- Generated by
1.14.0
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Lattice Microbes 2.5
This is for whole cell modeling
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This is the complete list of members for lm::rdme::ByteLattice, including all inherited members.
| addParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particle) | lm::rdme::ByteLattice | virtual |
| addParticle(lattice_size_t subvolume, particle_t particle) | lm::rdme::ByteLattice | virtual |
| allocateMemory() | lm::rdme::ByteLattice | protectedvirtual |
| ByteLattice(lattice_coord_t size, si_dist_t spacing, uint particlesPerSite) | lm::rdme::ByteLattice | |
| ByteLattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing, uint particlesPerSite) | lm::rdme::ByteLattice | |
| copyNativeToRowMajorByte(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, uint particlesPerSite, size_t bufferSize) | lm::rdme::ByteLattice | static |
| copyRowMajorByteToNative(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, uint particlesPerSite, size_t bufferSize) | lm::rdme::ByteLattice | static |
| copySites(void *destBuffer, size_t latticeSize) | lm::rdme::ByteLattice | |
| copySitesNativeToRowMajorByte(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, size_t bufferSize) | lm::rdme::ByteLattice | static |
| copySitesRowMajorByteToNative(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, size_t bufferSize) | lm::rdme::ByteLattice | static |
| deallocateMemory() | lm::rdme::ByteLattice | protectedvirtual |
| findParticles(particle_t minParticleType, particle_t maxParticleType) | lm::rdme::ByteLattice | virtual |
| getLatticeMemorySize() const | lm::rdme::ByteLattice | virtual |
| getMaxOccupancy() const | lm::rdme::ByteLattice | virtual |
| getMaxParticle() const | lm::rdme::ByteLattice | virtual |
| getMaxSiteType() const | lm::rdme::ByteLattice | virtual |
| getNearbySites(lattice_size_t xc, lattice_size_t yc, lattice_size_t zc, uint minDistance, uint maxDistance) | lm::rdme::Lattice | |
| getNeighboringSites(lattice_size_t index, lattice_size_t *neighboringIndices) | lm::rdme::ByteLattice | virtual |
| getNumberSites() const | lm::rdme::Lattice | virtual |
| getOccupancy(lattice_size_t x, lattice_size_t y, lattice_size_t z) const | lm::rdme::ByteLattice | virtual |
| getOccupancy(lattice_size_t subvolume) const | lm::rdme::ByteLattice | virtual |
| getParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_size_t particleIndex) const | lm::rdme::ByteLattice | virtual |
| getParticle(lattice_size_t subvolume, site_size_t particleIndex) const | lm::rdme::ByteLattice | virtual |
| getParticleCounts() | lm::rdme::ByteLattice | virtual |
| getParticleLatticeView(uint8_t **particleLattice, int *Nw, int *Nz, int *Ny, int *Nx, int *Np) | lm::rdme::ByteLattice | virtual |
| getParticlesMemory() | lm::rdme::ByteLattice | protectedvirtual |
| getSiteLatticeView(uint8_t **siteLattice, int *Nz, int *Ny, int *Nx) | lm::rdme::ByteLattice | virtual |
| getSitesMemory() | lm::rdme::ByteLattice | protectedvirtual |
| getSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z) const | lm::rdme::ByteLattice | virtual |
| getSiteType(lattice_size_t subvolume) const | lm::rdme::ByteLattice | virtual |
| getSize() const | lm::rdme::Lattice | virtual |
| getSpacing() const | lm::rdme::Lattice | virtual |
| getXSize() const | lm::rdme::Lattice | virtual |
| getYSize() const | lm::rdme::Lattice | virtual |
| getZSize() const | lm::rdme::Lattice | virtual |
| Lattice(lattice_coord_t size, si_dist_t spacing) | lm::rdme::Lattice | |
| Lattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing) | lm::rdme::Lattice | |
| MGPUMpdRdmeSolver class | lm::rdme::ByteLattice | friend |
| MpdRdmeSolver class | lm::rdme::ByteLattice | friend |
| MPIMpdRdmeSolver class | lm::rdme::ByteLattice | friend |
| nativeSerialize(void *destBuffer, void *lattice, size_t latticeSize) | lm::rdme::ByteLattice | static |
| nativeSerializeSites(void *destBuffer, void *lattice, size_t latticeSize) | lm::rdme::ByteLattice | static |
| numberSites | lm::rdme::Lattice | protected |
| particles | lm::rdme::ByteLattice | protected |
| print() const | lm::rdme::Lattice | virtual |
| removeAllParticles() | lm::rdme::ByteLattice | virtual |
| removeParticles(lattice_size_t x, lattice_size_t y, lattice_size_t z) | lm::rdme::ByteLattice | virtual |
| removeParticles(lattice_size_t subvolume) | lm::rdme::ByteLattice | virtual |
| rowMajorByteSerialize(void *destBuffer, void *lattice, size_t bufferSize) | lm::rdme::Lattice | static |
| rowMajorByteSerializeSites(void *destBuffer, void *lattice, size_t bufferSize) | lm::rdme::Lattice | static |
| rowMajorIntSerialize(void *destBuffer, void *lattice, size_t bufferSize) | lm::rdme::Lattice | static |
| setFromRowMajorByteData(void *buffer, size_t bufferSize) | lm::rdme::ByteLattice | virtual |
| setSitesFromRowMajorByteData(void *buffer, size_t bufferSize) | lm::rdme::ByteLattice | virtual |
| setSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_t siteType) | lm::rdme::ByteLattice | virtual |
| setSiteType(lattice_size_t subvolume, site_t site) | lm::rdme::ByteLattice | virtual |
| siteTypes | lm::rdme::ByteLattice | protected |
| size | lm::rdme::Lattice | protected |
| spacing | lm::rdme::Lattice | protected |
| wordsPerSite | lm::rdme::ByteLattice | protected |
| ~ByteLattice() | lm::rdme::ByteLattice | virtual |
| ~Lattice() | lm::rdme::Lattice | virtual |
1.14.0