Lattice Microbes 2.5
This is for whole cell modeling
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UnionSet.h
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1/*
2 * University of Illinois Open Source License
3 * Copyright 2014-2018 Luthey-Schulten Group,
4 * All rights reserved.
5 *
6 * Developed by: Luthey-Schulten Group
7 * University of Illinois at Urbana-Champaign
8 * http://www.scs.uiuc.edu/~schulten
9 *
10 * Permission is hereby granted, free of charge, to any person obtaining a copy of
11 * this software and associated documentation files (the Software), to deal with
12 * the Software without restriction, including without limitation the rights to
13 * use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
14 * of the Software, and to permit persons to whom the Software is furnished to
15 * do so, subject to the following conditions:
16 *
17 * - Redistributions of source code must retain the above copyright notice,
18 * this list of conditions and the following disclaimers.
19 *
20 * - Redistributions in binary form must reproduce the above copyright notice,
21 * this list of conditions and the following disclaimers in the documentation
22 * and/or other materials provided with the distribution.
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24 * - Neither the names of the Luthey-Schulten Group, University of Illinois at
25 * Urbana-Champaign, nor the names of its contributors may be used to endorse or
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27 * permission.
28 *
29 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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31 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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37 * Author(s): Joseph R. Peterson
38 */
39
40#ifndef LM_BUILDER_UNIONSET_H_
41#define LM_BUILDER_UNIONSET_H_
42
43#include <vector>
44
45namespace lm {
46 namespace builder {
47
50 class UnionSet : public Shape
51 {
52 public:
57 virtual ~UnionSet();
58
61 void addShape(Shape *s);
62
66 virtual bool intersects(Shape * query);
70 virtual bool contains(point query);
74 virtual bool contains(Shape * query);
76 virtual double getVolume(bool reintegrate = false);
77 virtual double getVolume() {
78 return this->getVolume(false);
79 }
80
81 protected:
82 std::vector<Shape *> shapes;
85 };
86
87 }
88}
89
90#endif /* defined(LM_BUILDER_UNIONSET) */
uint32_t site_t
Definition Lattice.h:74
site_t type
Definition Shape.h:378
Shape(ShapeType shapeType, bounding_box boundingBox, site_t type, vector at=vector(0.0, 0.0, 1.0), vector up=vector(0.0, 1.0, 0.0))
Create a Shape.
Definition Shape.cpp:129
virtual double getVolume()
Get the total internal volume of the shape.
Definition UnionSet.h:77
virtual bool intersects(Shape *query)
Check if two shapes intersect.
Definition UnionSet.cpp:69
UnionSet(site_t type)
Create a UnionSet.
Definition UnionSet.cpp:50
void addShape(Shape *s)
Add a shape to the union.
Definition UnionSet.cpp:61
virtual bool contains(point query)
Determine if the shape contains the specified point.
Definition UnionSet.cpp:82
std::vector< Shape * > shapes
Definition UnionSet.h:82
double storedVolume
Definition UnionSet.h:84
virtual ~UnionSet()
Destroy the Sphere.
Definition UnionSet.cpp:57
bool hasBeenIntegrated
Definition UnionSet.h:83
Definition Capsule.cpp:47
Definition Capsule.cpp:46
Type to store a position in space.
Definition Shape.h:67