Lattice Microbes 2.5
This is for whole cell modeling
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jLM.Analysis.TrajAnalysisMixin Member List

This is the complete list of members for jLM.Analysis.TrajAnalysisMixin, including all inherited members.

_cachedResult(self, key, val=None)jLM.Analysis.TrajAnalysisMixinprotected
_frameParse(ts, frameStart, frameEnd, timeStart, timeEnd)jLM.Analysis.TrajAnalysisMixinprotectedstatic
_postprocCachejLM.Analysis.TrajAnalysisMixinprotected
_postprocess_siteparticlecounts(self, rep, reg_num=16384, spe_num=16384, max_regions=16384, max_species=16384)jLM.Analysis.TrajAnalysisMixinprotected
_regionIdParse(self, regex, region)jLM.Analysis.TrajAnalysisMixinprotected
_replicateParse(self, replicate)jLM.Analysis.TrajAnalysisMixinprotected
_speciesIdParse(self, regex, species, startIndex=0)jLM.Analysis.TrajAnalysisMixinprotected
getLatticeHistogram(self, regex=None, species=None, integrated="xyz", replicate=None, frameStart=None, frameEnd=None, timeStart=None, timeEnd=None)jLM.Analysis.TrajAnalysisMixin
getLatticeTrajectory(self, regex=None, species=None, integrated="", replicate=None, frameStart=None, frameEnd=None, timeStart=None, timeEnd=None)jLM.Analysis.TrajAnalysisMixin
getNumberTrajectory(self, regex=None, species=None, replicate=None, frameStart=None, frameEnd=None, timeStart=None, timeEnd=None)jLM.Analysis.TrajAnalysisMixin
getNumberTrajectoryFromRegion(self, spRegex=None, species=None, regRegex=None, region=None, replicate=None, frameStart=None, frameEnd=None, frameDownScale=None, timeStart=None, timeEnd=None, timeDownScale=None)jLM.Analysis.TrajAnalysisMixin
replicatesjLM.Analysis.TrajAnalysisMixin