Lattice Microbes 2.5
This is for whole cell modeling
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lm::rdme::Lattice Member List

This is the complete list of members for lm::rdme::Lattice, including all inherited members.

addParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particle)=0lm::rdme::Latticepure virtual
addParticle(lattice_size_t index, particle_t particle)=0lm::rdme::Latticepure virtual
findParticles(particle_t minParticleType, particle_t maxParticleType)=0lm::rdme::Latticepure virtual
getLatticeMemorySize() const =0lm::rdme::Latticepure virtual
getMaxOccupancy() const =0lm::rdme::Latticepure virtual
getMaxParticle() const =0lm::rdme::Latticepure virtual
getMaxSiteType() const =0lm::rdme::Latticepure virtual
getNearbySites(lattice_size_t xc, lattice_size_t yc, lattice_size_t zc, uint minDistance, uint maxDistance)lm::rdme::Lattice
getNeighboringSites(lattice_size_t index, lattice_size_t *neighboringIndices)=0lm::rdme::Latticepure virtual
getNumberSites() constlm::rdme::Latticevirtual
getOccupancy(lattice_size_t x, lattice_size_t y, lattice_size_t z) const =0lm::rdme::Latticepure virtual
getOccupancy(lattice_size_t index) const =0lm::rdme::Latticepure virtual
getParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_size_t particleIndex) const =0lm::rdme::Latticepure virtual
getParticle(lattice_size_t index, site_size_t particleIndex) const =0lm::rdme::Latticepure virtual
getParticleCounts()=0lm::rdme::Latticepure virtual
getSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z) const =0lm::rdme::Latticepure virtual
getSiteType(lattice_size_t index) const =0lm::rdme::Latticepure virtual
getSize() constlm::rdme::Latticevirtual
getSpacing() constlm::rdme::Latticevirtual
getXSize() constlm::rdme::Latticevirtual
getYSize() constlm::rdme::Latticevirtual
getZSize() constlm::rdme::Latticevirtual
Lattice(lattice_coord_t size, si_dist_t spacing)lm::rdme::Lattice
Lattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing)lm::rdme::Lattice
numberSiteslm::rdme::Latticeprotected
print() constlm::rdme::Latticevirtual
removeAllParticles()lm::rdme::Latticevirtual
removeParticles(lattice_size_t x, lattice_size_t y, lattice_size_t z)=0lm::rdme::Latticepure virtual
removeParticles(lattice_size_t index)=0lm::rdme::Latticepure virtual
rowMajorByteSerialize(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
rowMajorByteSerializeSites(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
rowMajorIntSerialize(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
setFromRowMajorByteData(void *buffer, size_t bufferSize)=0lm::rdme::Latticepure virtual
setSitesFromRowMajorByteData(void *buffer, size_t bufferSize)=0lm::rdme::Latticepure virtual
setSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_t site)=0lm::rdme::Latticepure virtual
setSiteType(lattice_size_t index, site_t site)=0lm::rdme::Latticepure virtual
sizelm::rdme::Latticeprotected
spacinglm::rdme::Latticeprotected
~Lattice()lm::rdme::Latticevirtual