Lattice Microbes 2.5
This is for whole cell modeling
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lm::rdme::ByteLatticeExtended Member List

This is the complete list of members for lm::rdme::ByteLatticeExtended, including all inherited members.

addParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particle)lm::rdme::ByteLatticevirtual
addParticle(lattice_size_t subvolume, particle_t particle)lm::rdme::ByteLatticevirtual
addParticleWithSizeCheck(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particle)lm::rdme::ByteLatticeExtendedvirtual
addParticleWithSizeCheck(lattice_size_t subvolume, particle_t particle)lm::rdme::ByteLatticeExtendedvirtual
allocateMemory()lm::rdme::ByteLatticeprotectedvirtual
ByteLattice(lattice_coord_t size, si_dist_t spacing, uint particlesPerSite)lm::rdme::ByteLattice
ByteLattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing, uint particlesPerSite)lm::rdme::ByteLattice
ByteLatticeExtended(lattice_coord_t size, si_dist_t spacing, uint particlesPerSite, bool enableSizeChecking=true)lm::rdme::ByteLatticeExtended
ByteLatticeExtended(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing, uint particlesPerSite, bool enableSizeChecking=true)lm::rdme::ByteLatticeExtended
canAddParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particle) constlm::rdme::ByteLatticeExtended
canAddParticle(lattice_size_t subvolume, particle_t particle) constlm::rdme::ByteLatticeExtended
copyNativeToRowMajorByte(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, uint particlesPerSite, size_t bufferSize)lm::rdme::ByteLatticestatic
copyRowMajorByteToNative(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, uint particlesPerSite, size_t bufferSize)lm::rdme::ByteLatticestatic
copySites(void *destBuffer, size_t latticeSize)lm::rdme::ByteLattice
copySitesNativeToRowMajorByte(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, size_t bufferSize)lm::rdme::ByteLatticestatic
copySitesRowMajorByteToNative(void *destBuffer, void *sourceBuffer, lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, size_t bufferSize)lm::rdme::ByteLatticestatic
deallocateMemory()lm::rdme::ByteLatticeprotectedvirtual
findParticles(particle_t minParticleType, particle_t maxParticleType)lm::rdme::ByteLatticevirtual
getLatticeMemorySize() constlm::rdme::ByteLatticevirtual
getMaxOccupancy() constlm::rdme::ByteLatticevirtual
getMaxParticle() constlm::rdme::ByteLatticevirtual
getMaxParticleCount(lattice_size_t x, lattice_size_t y, lattice_size_t z, particle_t particleType) constlm::rdme::ByteLatticeExtended
getMaxParticleCount(lattice_size_t subvolume, particle_t particleType) constlm::rdme::ByteLatticeExtended
getMaxSiteType() constlm::rdme::ByteLatticevirtual
getNearbySites(lattice_size_t xc, lattice_size_t yc, lattice_size_t zc, uint minDistance, uint maxDistance)lm::rdme::Lattice
getNeighboringSites(lattice_size_t index, lattice_size_t *neighboringIndices)lm::rdme::ByteLatticevirtual
getNumberSites() constlm::rdme::Latticevirtual
getOccupancy(lattice_size_t x, lattice_size_t y, lattice_size_t z) constlm::rdme::ByteLatticevirtual
getOccupancy(lattice_size_t subvolume) constlm::rdme::ByteLatticevirtual
getParticle(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_size_t particleIndex) constlm::rdme::ByteLatticevirtual
getParticle(lattice_size_t subvolume, site_size_t particleIndex) constlm::rdme::ByteLatticevirtual
getParticleCounts()lm::rdme::ByteLatticevirtual
getParticleLatticeView(uint8_t **particleLattice, int *Nw, int *Nz, int *Ny, int *Nx, int *Np)lm::rdme::ByteLatticevirtual
getParticlesAtSite(lattice_size_t subvolume, particle_t *particles, site_size_t maxCount) constlm::rdme::ByteLatticeExtendedprotected
getParticleSize(particle_t particleType) constlm::rdme::ByteLatticeExtended
getParticleSizeManager() constlm::rdme::ByteLatticeExtended
getParticlesMemory()lm::rdme::ByteLatticeprotectedvirtual
getSiteLatticeView(uint8_t **siteLattice, int *Nz, int *Ny, int *Nx)lm::rdme::ByteLatticevirtual
getSitesMemory()lm::rdme::ByteLatticeprotectedvirtual
getSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z) constlm::rdme::ByteLatticevirtual
getSiteType(lattice_size_t subvolume) constlm::rdme::ByteLatticevirtual
getSize() constlm::rdme::Latticevirtual
getSizeBasedOccupancy(lattice_size_t x, lattice_size_t y, lattice_size_t z) constlm::rdme::ByteLatticeExtended
getSizeBasedOccupancy(lattice_size_t subvolume) constlm::rdme::ByteLatticeExtended
getSizeBasedOccupancyStats() constlm::rdme::ByteLatticeExtended
getSpacing() constlm::rdme::Latticevirtual
getXSize() constlm::rdme::Latticevirtual
getYSize() constlm::rdme::Latticevirtual
getZSize() constlm::rdme::Latticevirtual
isSizeCheckingEnabled() constlm::rdme::ByteLatticeExtended
Lattice(lattice_coord_t size, si_dist_t spacing)lm::rdme::Lattice
Lattice(lattice_size_t xSize, lattice_size_t ySize, lattice_size_t zSize, si_dist_t spacing)lm::rdme::Lattice
maxSiteCapacity_lm::rdme::ByteLatticeExtendedprotected
nativeSerialize(void *destBuffer, void *lattice, size_t latticeSize)lm::rdme::ByteLatticestatic
nativeSerializeSites(void *destBuffer, void *lattice, size_t latticeSize)lm::rdme::ByteLatticestatic
numberSiteslm::rdme::Latticeprotected
particleslm::rdme::ByteLatticeprotected
print() constlm::rdme::Latticevirtual
removeAllParticles()lm::rdme::ByteLatticevirtual
removeParticles(lattice_size_t x, lattice_size_t y, lattice_size_t z)lm::rdme::ByteLatticevirtual
removeParticles(lattice_size_t subvolume)lm::rdme::ByteLatticevirtual
rowMajorByteSerialize(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
rowMajorByteSerializeSites(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
rowMajorIntSerialize(void *destBuffer, void *lattice, size_t bufferSize)lm::rdme::Latticestatic
setFromRowMajorByteData(void *buffer, size_t bufferSize)lm::rdme::ByteLatticevirtual
setParticleSize(particle_t particleType, uint32_t size)lm::rdme::ByteLatticeExtended
setSitesFromRowMajorByteData(void *buffer, size_t bufferSize)lm::rdme::ByteLatticevirtual
setSiteType(lattice_size_t x, lattice_size_t y, lattice_size_t z, site_t siteType)lm::rdme::ByteLatticevirtual
setSiteType(lattice_size_t subvolume, site_t site)lm::rdme::ByteLatticevirtual
setSizeCheckingEnabled(bool enable)lm::rdme::ByteLatticeExtended
siteTypeslm::rdme::ByteLatticeprotected
sizelm::rdme::Latticeprotected
sizeCheckingEnabled_lm::rdme::ByteLatticeExtendedprotected
sizeManager_lm::rdme::ByteLatticeExtendedprotected
spacinglm::rdme::Latticeprotected
validateSizeConstraints() constlm::rdme::ByteLatticeExtended
wordsPerSitelm::rdme::ByteLatticeprotected
~ByteLattice()lm::rdme::ByteLatticevirtual
~ByteLatticeExtended()=defaultlm::rdme::ByteLatticeExtendedvirtual
~Lattice()lm::rdme::Latticevirtual