Lattice Microbes 2.5
This is for whole cell modeling
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Capsule.h
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1/*
2 * University of Illinois Open Source License
3 * Copyright 2011-2018 Luthey-Schulten Group,
4 * All rights reserved.
5 *
6 * Developed by: Luthey-Schulten Group
7 * University of Illinois at Urbana-Champaign
8 * http://www.scs.uiuc.edu/~schulten
9 *
10 * Permission is hereby granted, free of charge, to any person obtaining a copy of
11 * this software and associated documentation files (the Software), to deal with
12 * the Software without restriction, including without limitation the rights to
13 * use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
14 * of the Software, and to permit persons to whom the Software is furnished to
15 * do so, subject to the following conditions:
16 *
17 * - Redistributions of source code must retain the above copyright notice,
18 * this list of conditions and the following disclaimers.
19 *
20 * - Redistributions in binary form must reproduce the above copyright notice,
21 * this list of conditions and the following disclaimers in the documentation
22 * and/or other materials provided with the distribution.
23 *
24 * - Neither the names of the Luthey-Schulten Group, University of Illinois at
25 * Urbana-Champaign, nor the names of its contributors may be used to endorse or
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27 * permission.
28 *
29 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
30 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
31 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
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36 *
37 * Author(s): Elijah Roberts
38 */
39
40#ifndef LM_BUILDER_CAPSULE_H_
41#define LM_BUILDER_CAPSULE_H_
42
43#include "builder/Shape.h"
44#include "rdme/Lattice.h"
45
46namespace lm {
47namespace builder {
48
51class Capsule : public Shape
52{
53public:
61 virtual ~Capsule();
62
66 virtual bool intersects(Shape * query);
70 virtual bool contains(point query);
74 virtual bool contains(Shape * query);
75
77 virtual point getP1() {return p1;}
79 virtual point getP2() {return p2;}
81 virtual si_dist_t getRadius() {return radius;}
83 virtual double getVolume();
84
85private:
86 static bounding_box calcBoundingBox(point p1, point p2, si_dist_t radius);
87
88protected:
92};
93
94}
95}
96
97#endif
98
uint32_t site_t
Definition Lattice.h:74
double si_dist_t
Definition Types.h:63
si_dist_t radius
Definition Capsule.h:90
virtual double getVolume()
Get the total internal volume of the Capsule.
Definition Capsule.cpp:163
virtual ~Capsule()
Destroy the Capsule.
Definition Capsule.cpp:76
virtual point getP2()
Get point of second end of cylinder.
Definition Capsule.h:79
virtual si_dist_t getRadius()
Get the radius of the cylinder/hemisphere ends.
Definition Capsule.h:81
point p1
Definition Capsule.h:89
virtual point getP1()
Get point of first end of cylinder.
Definition Capsule.h:77
Capsule(point p1, point p2, si_dist_t radius, site_t type)
Create a Capsule.
Definition Capsule.cpp:50
virtual bool intersects(Shape *query)
Check if two shapes intersect.
Definition Capsule.cpp:80
virtual bool contains(point query)
Determine if the shape contains the specified point.
Definition Capsule.cpp:92
point p2
Definition Capsule.h:89
si_dist_t length
Definition Capsule.h:91
site_t type
Definition Shape.h:378
Shape(ShapeType shapeType, bounding_box boundingBox, site_t type, vector at=vector(0.0, 0.0, 1.0), vector up=vector(0.0, 1.0, 0.0))
Create a Shape.
Definition Shape.cpp:129
Definition Capsule.cpp:47
Definition Capsule.cpp:46
The bounds for a shape represented as a rectangular box.
Definition Shape.h:110
Type to store a position in space.
Definition Shape.h:67