| addToParameterTrackingList(pair< string, double * >parameter) | lm::cme::CMESolver | virtual |
| allocateModel(uint numberSpecies, uint numberReactions) | lm::cme::CMESolver | protectedvirtual |
| buildModel(const uint numberSpecies, const uint numberReactions, const uint *initialSpeciesCounts, const uint *reactionType, const double *k, const int *S, const uint *D, const uint kCols=1) | lm::cme::NextReactionSolver | virtual |
| CMESolver(RandomGenerator::Distributions neededDists) | lm::cme::CMESolver | |
| competitiveMMPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| D | lm::cme::CMESolver | protected |
| dependentReactions | lm::cme::CMESolver | protected |
| dependentSpecies | lm::cme::CMESolver | protected |
| dependentSpeciesChange | lm::cme::CMESolver | protected |
| destroyModel() | lm::cme::NextReactionSolver | protectedvirtual |
| firstOrderPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| fptTrackedSpecies | lm::cme::CMESolver | protected |
| generateTrajectory() | lm::cme::NextReactionSolver | virtual |
| getReactionRateConstantsView(int reactionNumber, double **rates, int *rateConstantCount) | lm::cme::CMESolver | virtual |
| getSpeciesCountView(uint **counts, int *number) | lm::cme::CMESolver | virtual |
| hookSimulation(double time) | lm::cme::NextReactionSolver | protectedvirtual |
| initialize(unsigned int replicate, map< string, string > *parameters, ResourceAllocator::ComputeResources *resources) | lm::cme::CMESolver | virtual |
| initialSpeciesCounts | lm::cme::CMESolver | protected |
| kHillPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| kHillTransportPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| MESolver() | lm::me::MESolver | |
| michaelisMentenPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| neededDists | lm::cme::CMESolver | protected |
| needsDiffusionModel() | lm::cme::NextReactionSolver | inlinevirtual |
| needsReactionModel() | lm::cme::NextReactionSolver | inlinevirtual |
| NextReactionSolver() | lm::cme::NextReactionSolver | |
| NextReactionSolver(RandomGenerator::Distributions neededDists) | lm::cme::NextReactionSolver | |
| noncompetitiveMMPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| numberDependentReactions | lm::cme::CMESolver | protected |
| numberDependentSpecies | lm::cme::CMESolver | protected |
| numberFptTrackedSpecies | lm::cme::CMESolver | protected |
| numberReactions | lm::cme::CMESolver | protected |
| numberSpecies | lm::cme::CMESolver | protected |
| numberSpeciesLimits | lm::cme::CMESolver | protected |
| numberSpeciesToTrack | lm::cme::CMESolver | protected |
| onBeginTrajectory() | lm::cme::CMESolver | protectedvirtual |
| onEndTrajectory() | lm::cme::CMESolver | protectedvirtual |
| parameters | lm::cme::CMESolver | protected |
| propensityArgs | lm::cme::CMESolver | protected |
| propensityFunctionArgs | lm::cme::CMESolver | protected |
| propensityFunctions | lm::cme::CMESolver | protected |
| queueRecordedParameters(bool flush=false) | lm::cme::CMESolver | protectedvirtual |
| reachedSpeciesLimit() | lm::cme::CMESolver | inlineprotected |
| reactionQueue | lm::cme::NextReactionSolver | protected |
| reactionTypes | lm::cme::CMESolver | protected |
| recordParameters(double nextRecordTime, double recordInterval, double simulationTime) | lm::cme::CMESolver | protectedvirtual |
| replicate | lm::cme::CMESolver | protected |
| resources | lm::cme::CMESolver | protected |
| rng | lm::cme::CMESolver | protected |
| S | lm::cme::CMESolver | protected |
| secondOrderPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| secondOrderSelfPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| setFptTrackingList(list< uint > speciesList) | lm::cme::CMESolver | virtual |
| setModelPropensityFunction(uint reaction, double(*propensityFunction)(double time, uint *speciesCounts, void *args), void *propensityFunctionArg) | lm::cme::CMESolver | virtual |
| setReactionModel(lm::io::ReactionModel *reactionModel) | lm::cme::CMESolver | virtual |
| setReactionRateCME(unsigned int reactionId, double rate) | lm::cme::CMESolver | virtual |
| setSpeciesLowerLimit(uint species, uint limit) | lm::cme::CMESolver | virtual |
| setSpeciesUpperLimit(uint species, uint limit) | lm::cme::CMESolver | virtual |
| speciesCounts | lm::cme::CMESolver | protected |
| speciesLimits | lm::cme::CMESolver | protected |
| trackedParameters | lm::cme::CMESolver | protected |
| uncompetitiveMMPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| updateAllReactionEvents(double time, int rngNext, double *expRngValues) | lm::cme::NextReactionSolver | inlineprotected |
| updateReactionEvents(uint sourceReaction, double time, int rngNext, double *expRngValues) | lm::cme::NextReactionSolver | inlineprotected |
| updateSpeciesCounts(uint r) | lm::cme::CMESolver | inlineprotected |
| zerothOrderHeavisidePropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| zerothOrderPropensity(double time, uint *speciesCounts, void *pargs) | lm::cme::CMESolver | protectedstatic |
| ~CMESolver() | lm::cme::CMESolver | virtual |
| ~MESolver() | lm::me::MESolver | virtual |
| ~NextReactionSolver() | lm::cme::NextReactionSolver | virtual |
1.14.0